Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-113
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 49, 0

Conread position: 1-183
Cow position:
Alignm length: 183
Alignm identity: 142
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 1-186
Cow position:
Alignm length: 187
Alignm identity: 151
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 178, 0

Conread position: 1-215
Cow position:
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-237
Cow position:
Alignm length: 238
Alignm identity: 160
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 140, 39

Conread position: 1-237
Cow position:
Alignm length: 238
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 80, 46

Conread position: 1-259
Cow position:
Alignm length: 263
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 209, 48

Conread position: 1-281
Cow position:
Alignm length: 281
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-290
Cow position:
Alignm length: 290
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 0

Conread position: 1-307
Cow position:
Alignm length: 308
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 201

Conread position: 1-314
Cow position:
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 141

Conread position: 1-315
Cow position:
Alignm length: 315
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-320
Cow position:
Alignm length: 320
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-321
Cow position:
Alignm length: 323
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 73, 17

Conread position: 1-325
Cow position:
Alignm length: 326
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 315, 49

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 270

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 333
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 140

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 256

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 146

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-326
Cow position:
Alignm length: 326
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 163

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 292

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 100

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 80

Conread position: 1-333
Cow position:
Alignm length: 338
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 49

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 34

Conread position: 1-333
Cow position:
Alignm length: 336
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 174

Conread position: 1-334
Cow position:
Alignm length: 335
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-335
Cow position:
Alignm length: 337
Alignm identity: 230
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 86, 42

Conread position: 1-335
Cow position:
Alignm length: 335
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-349
Cow position:
Alignm length: 350
Alignm identity: 239
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 294, 72

Conread position: 1-349
Cow position:
Alignm length: 350
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 37

Conread position: 1-352
Cow position:
Alignm length: 354
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 147

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 46

Conread position: 1-365
Cow position:
Alignm length: 367
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 327

Conread position: 1-370
Cow position:
Alignm length: 373
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 222

Conread position: 1-400
Cow position:
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 92

Conread position: 1-405
Cow position:
Alignm length: 410
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 45

Conread position: 1-509
Cow position:
Alignm length: 521
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 9

Conread position: 1-509
Cow position:
Alignm length: 521
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 108

Conread position: 2-117
Cow position:
Alignm length: 116
Alignm identity: 96
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-326
Cow position:
Alignm length: 326
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 173

Conread position: 2-335
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 307, 72

Conread position: 2-358
Cow position:
Alignm length: 370
Alignm identity: 253
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 42, 270

Conread position: 2-371
Cow position:
Alignm length: 373
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 45

Conread position: 2-508
Cow position:
Alignm length: 531
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 47

Conread position: 3-174
Cow position:
Alignm length: 178
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 107, 40

Conread position: 3-272
Cow position:
Alignm length: 272
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 106

Conread position: 3-322
Cow position:
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 47

Conread position: 3-335
Cow position:
Alignm length: 341
Alignm identity: 239
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 218, 41

Conread position: 3-364
Cow position:
Alignm length: 368
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 44

Conread position: 3-370
Cow position:
Alignm length: 370
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 73

Conread position: 3-370
Cow position:
Alignm length: 374
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 46

Conread position: 4-177
Cow position:
Alignm length: 175
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 77

Conread position: 4-185
Cow position:
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 25, 19

Conread position: 4-314
Cow position:
Alignm length: 311
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 4-327
Cow position:
Alignm length: 325
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 4-330
Cow position:
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 23

Conread position: 4-333
Cow position:
Alignm length: 334
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 77

Conread position: 4-333
Cow position:
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 38

Conread position: 4-352
Cow position:
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 36

Conread position: 4-367
Cow position:
Alignm length: 367
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 184

Conread position: 4-370
Cow position:
Alignm length: 369
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 333

Conread position: 4-450
Cow position:
Alignm length: 454
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 4-509
Cow position:
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 45

Conread position: 7-308
Cow position:
Alignm length: 302
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 8-438
Cow position:
Alignm length: 437
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 108

Conread position: 8-507
Cow position:
Alignm length: 506
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 47

Conread position: 10-298
Cow position:
Alignm length: 289
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 10-307
Cow position:
Alignm length: 298
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 12-337
Cow position:
Alignm length: 326
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 0

Conread position: 14-413
Cow position:
Alignm length: 407
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 15-402
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 242

Conread position: 15-510
Cow position:
Alignm length: 507
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 86

Conread position: 17-314
Cow position:
Alignm length: 302
Alignm identity: 192
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 47

Conread position: 19-413
Cow position:
Alignm length: 406
Alignm identity: 275
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 168, 39

Conread position: 34-289
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 179, 59

Conread position: 34-333
Cow position:
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 39

Conread position: 34-334
Cow position:
Alignm length: 305
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 19, 54

Conread position: 34-335
Cow position:
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 36

Conread position: 36-307
Cow position:
Alignm length: 273
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 141

Conread position: 37-302
Cow position:
Alignm length: 268
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 93, 27

Conread position: 38-333
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 41-198
Cow position:
Alignm length: 158
Alignm identity: 128
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 41-326
Cow position:
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 27

Conread position: 59-370
Cow position:
Alignm length: 328
Alignm identity: 216
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 170, 26

Conread position: 68-259
Cow position:
Alignm length: 193
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 84

Conread position: 68-297
Cow position:
Alignm length: 230
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 0

Conread position: 73-370
Cow position:
Alignm length: 300
Alignm identity: 204
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 226, 61

Conread position: 78-333
Cow position:
Alignm length: 258
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 0

Conread position: 105-508
Cow position:
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 185

Conread position: 107-334
Cow position:
Alignm length: 229
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 63

Conread position: 116-255
Cow position:
Alignm length: 140
Alignm identity: 115
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 118-256
Cow position:
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 13

Conread position: 128-509
Cow position:
Alignm length: 393
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 59

Conread position: 129-376
Cow position:
Alignm length: 255
Alignm identity: 173
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 126

Conread position: 132-370
Cow position:
Alignm length: 241
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 205

Conread position: 136-282
Cow position:
Alignm length: 147
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 142-306
Cow position:
Alignm length: 166
Alignm identity: 139
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 111, 0

Conread position: 175-326
Cow position:
Alignm length: 153
Alignm identity: 123
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 136, 0

Conread position: 175-326
Cow position:
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 134, 0

Conread position: 184-370
Cow position:
Alignm length: 189
Alignm identity: 145
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 125, 153

Conread position: 199-403
Cow position:
Alignm length: 206
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 117, 134

Conread position: 226-333
Cow position:
Alignm length: 110
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 64

Conread position: 334-508
Cow position:
Alignm length: 179
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 124, 0

Conread position: 599-732
Cow position:
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 80

Conread position: 599-744
Cow position:
Alignm length: 151
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 53

Conread position: 602-731
Cow position:
Alignm length: 130
Alignm identity: 104
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 602-744
Cow position:
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 39

Conread position: 605-722
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 605-723
Cow position:
Alignm length: 119
Alignm identity: 102
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 609-730
Cow position:
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 72

Show alignments to all cow chromosomes.