Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-177 |
| Cow position: | chr23:25847218-25847392 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-213 |
| Cow position: | chr23:2340328-2340532 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 167, 39 |
| Conread position: | 1-252 |
| Cow position: | chr23:4815998-4816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-269 |
| Cow position: | chr23:22945137-22944879 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 1-277 |
| Cow position: | chr23:1025136-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 100 |
| Conread position: | 1-281 |
| Cow position: | chr23:3013571-3013851 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-291 |
| Cow position: | chr23:13508993-13509267 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-299 |
| Cow position: | chr23:5874849-5874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-301 |
| Cow position: | chr23:34175108-34175402 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 241, 80 |
| Conread position: | 1-307 |
| Cow position: | chr23:2757519-2757825 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr23:2027193-2026881 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-314 |
| Cow position: | chr23:15525535-15525848 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr23:36031448-36031135 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-326 |
| Cow position: | chr23:2313312-2312989 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 100 |
| Conread position: | 1-326 |
| Cow position: | chr23:4359755-4360081 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr23:4434386-4434707 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 42 |
| Conread position: | 1-326 |
| Cow position: | chr23:4640699-4640373 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr23:4888606-4888924 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 24 |
| Conread position: | 1-326 |
| Cow position: | chr23:15219963-15219640 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 1-326 |
| Cow position: | chr23:27399429-27399754 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 256 |
| Conread position: | 1-326 |
| Cow position: | chr23:28217216-28217541 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 67 |
| Conread position: | 1-326 |
| Cow position: | chr23:31446740-31447066 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-333 |
| Cow position: | chr23:4276880-4277214 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 100 |
| Conread position: | 1-334 |
| Cow position: | chr23:19950658-19950324 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 72 |
| Conread position: | 1-349 |
| Cow position: | chr23:967420-967076 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 171 |
| Conread position: | 1-363 |
| Cow position: | chr23:6216500-6216864 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 1-364 |
| Cow position: | chr23:14965821-14965466 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 80 |
| Conread position: | 1-364 |
| Cow position: | chr23:28913337-28913679 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 27 |
| Conread position: | 1-365 |
| Cow position: | chr23:19489463-19489829 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 331 |
| Conread position: | 1-370 |
| Cow position: | chr23:2716315-2716681 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 133 |
| Conread position: | 1-370 |
| Cow position: | chr23:16616924-16616556 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 339 |
| Conread position: | 1-388 |
| Cow position: | chr23:3881773-3881395 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 48 |
| Conread position: | 1-396 |
| Cow position: | chr23:36211203-36210795 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 82, 308 |
| Conread position: | 2-315 |
| Cow position: | chr23:30636375-30636062 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 162 |
| Conread position: | 2-325 |
| Cow position: | chr23:10903458-10903787 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 12 |
| Conread position: | 2-364 |
| Cow position: | chr23:4751940-4752281 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 316, 36 |
| Conread position: | 2-370 |
| Cow position: | chr23:2795639-2795278 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 286 |
| Conread position: | 2-370 |
| Cow position: | chr23:14974635-14974274 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 172 |
| Conread position: | 2-376 |
| Cow position: | chr23:15177001-15177367 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 142 |
| Conread position: | 3-326 |
| Cow position: | chr23:20302142-20302463 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 3-364 |
| Cow position: | chr23:11778399-11778774 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 129 |
| Conread position: | 3-405 |
| Cow position: | chr23:19332475-19332077 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 25 |
| Conread position: | 4-269 |
| Cow position: | chr23:3380347-3380084 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 255, 30 |
| Conread position: | 4-299 |
| Cow position: | chr23:2524269-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-303 |
| Cow position: | chr23:22147322-22147023 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-328 |
| Cow position: | chr23:4510027-4510330 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 246, 51 |
| Conread position: | 4-441 |
| Cow position: | chr23:1327532-1327102 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 5-327 |
| Cow position: | chr23:5779157-5778835 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 71 |
| Conread position: | 6-333 |
| Cow position: | chr23:31591880-31591543 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 6-364 |
| Cow position: | chr23:2763831-2763481 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 327, 103 |
| Conread position: | 8-327 |
| Cow position: | chr23:988706-988396 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 34 |
| Conread position: | 8-334 |
| Cow position: | chr23:7273579-7273890 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 36 |
| Conread position: | 14-509 |
| Cow position: | chr23:29474618-29474118 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 54 |
| Conread position: | 17-353 |
| Cow position: | chr23:25684113-25683786 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 21-307 |
| Cow position: | chr23:31595292-31595005 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 21-364 |
| Cow position: | chr23:2574481-2574820 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 229 |
| Conread position: | 28-201 |
| Cow position: | chr23:31651602-31651435 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 28-335 |
| Cow position: | chr23:7047110-7046795 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 202 |
| Conread position: | 30-413 |
| Cow position: | chr23:38578228-38578619 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 32-291 |
| Cow position: | chr23:19450213-19450466 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 34-333 |
| Cow position: | chr23:17185085-17185386 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 94 |
| Conread position: | 35-317 |
| Cow position: | chr23:20156258-20155974 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 68-333 |
| Cow position: | chr23:8980318-8980062 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 43 |
| Conread position: | 68-335 |
| Cow position: | chr23:26836270-26836533 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 87-242 |
| Cow position: | chr23:2020018-2020170 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 89-299 |
| Cow position: | chr23:2782419-2782213 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 102-413 |
| Cow position: | chr23:16615970-16615655 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 115 |
| Conread position: | 125-370 |
| Cow position: | chr23:29452270-29452027 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 9 |
| Conread position: | 126-363 |
| Cow position: | chr23:33699185-33699419 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 126-370 |
| Cow position: | chr23:2765403-2765162 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 207 |
| Conread position: | 126-432 |
| Cow position: | chr23:22875623-22875323 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 204, 60 |
| Conread position: | 142-335 |
| Cow position: | chr23:3863013-3863206 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 169, 22 |
| Conread position: | 196-413 |
| Cow position: | chr23:31650790-31650571 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 211-722 |
| Cow position: | chr23:1402745-1402247 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 7 |
Show alignments to all cow chromosomes.