Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-89 |
| Cow position: | chr24:12288718-12288630 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 76 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-95 |
| Cow position: | chr24:13531525-13531431 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr24:6645424-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-149 |
| Cow position: | chr24:2636131-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-154 |
| Cow position: | chr24:7061111-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-201 |
| Cow position: | chr24:12224458-12224251 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-205 |
| Cow position: | chr24:38635766-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-237 |
| Cow position: | chr24:12131477-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-250 |
| Cow position: | chr24:12161890-12162134 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-281 |
| Cow position: | chr24:13524131-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-281 |
| Cow position: | chr24:22952147-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-302 |
| Cow position: | chr24:44017557-44017858 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-307 |
| Cow position: | chr24:37217015-37217316 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 1-307 |
| Cow position: | chr24:37321589-37321297 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-314 |
| Cow position: | chr24:12086209-12086522 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 1-320 |
| Cow position: | chr24:4415514-4415199 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 1-325 |
| Cow position: | chr24:14384602-14384279 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 1-326 |
| Cow position: | chr24:148606-148282 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 63 |
| Conread position: | 1-326 |
| Cow position: | chr24:6025084-6024761 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 189 |
| Conread position: | 1-326 |
| Cow position: | chr24:6434252-6434577 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 150 |
| Conread position: | 1-326 |
| Cow position: | chr24:13188196-13188510 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 219 |
| Conread position: | 1-326 |
| Cow position: | chr24:16084649-16084322 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 1-326 |
| Cow position: | chr24:19833392-19833722 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-326 |
| Cow position: | chr24:22793184-22793509 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 139 |
| Conread position: | 1-326 |
| Cow position: | chr24:33739333-33739003 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 1-333 |
| Cow position: | chr24:8030162-8030496 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr24:9188720-9188387 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 274 |
| Conread position: | 1-333 |
| Cow position: | chr24:35838614-35838275 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 241 |
| Conread position: | 1-334 |
| Cow position: | chr24:6084028-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-365 |
| Cow position: | chr24:17696958-17696604 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 46 |
| Conread position: | 1-410 |
| Cow position: | chr24:1447568-1447982 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 1-411 |
| Cow position: | chr24:35841606-35841195 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 39 |
| Conread position: | 1-415 |
| Cow position: | chr24:36707856-36708271 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 177 |
| Conread position: | 2-160 |
| Cow position: | chr24:17187553-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 2-314 |
| Cow position: | chr24:32331337-32331639 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 189, 103 |
| Conread position: | 2-322 |
| Cow position: | chr24:6515033-6514719 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 2-325 |
| Cow position: | chr24:12114029-12113711 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 2-326 |
| Cow position: | chr24:12485305-12484980 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 2-350 |
| Cow position: | chr24:12237066-12237417 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 0 |
| Conread position: | 2-370 |
| Cow position: | chr24:33933378-33933742 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 335 |
| Conread position: | 3-210 |
| Cow position: | chr24:14390716-14390511 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 166, 24 |
| Conread position: | 3-302 |
| Cow position: | chr24:14885237-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 36 |
| Conread position: | 3-326 |
| Cow position: | chr24:40548891-40549211 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 70 |
| Conread position: | 3-404 |
| Cow position: | chr24:6537559-6537951 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 4-288 |
| Cow position: | chr24:16141092-16141365 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 155, 100 |
| Conread position: | 4-367 |
| Cow position: | chr24:14585107-14585454 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 60 |
| Conread position: | 4-509 |
| Cow position: | chr24:12797751-12797243 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 40 |
| Conread position: | 5-508 |
| Cow position: | chr24:36560068-36559568 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 58 |
| Conread position: | 6-413 |
| Cow position: | chr24:12568260-12568658 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 7-307 |
| Cow position: | chr24:6660591-6660282 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 94 |
| Conread position: | 7-366 |
| Cow position: | chr24:6335712-6336061 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 66 |
| Conread position: | 8-334 |
| Cow position: | chr24:6145378-6145713 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 187 |
| Conread position: | 10-364 |
| Cow position: | chr24:12335754-12335403 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 283 |
| Conread position: | 10-413 |
| Cow position: | chr24:17303588-17303190 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 11-333 |
| Cow position: | chr24:9092252-9091940 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 63 |
| Conread position: | 14-411 |
| Cow position: | chr24:40654410-40654803 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 174 |
| Conread position: | 21-413 |
| Cow position: | chr24:7091564-7091170 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 79 |
| Conread position: | 34-208 |
| Cow position: | chr24:39678452-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 34-283 |
| Cow position: | chr24:4464221-4463975 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 34-325 |
| Cow position: | chr24:14873309-14873014 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 35-397 |
| Cow position: | chr24:6352217-6352592 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 239 |
| Conread position: | 38-326 |
| Cow position: | chr24:29187331-29187620 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 40-291 |
| Cow position: | chr24:12146085-12145830 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 55-314 |
| Cow position: | chr24:1438118-1437864 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 68-307 |
| Cow position: | chr24:15392246-15392023 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 68-494 |
| Cow position: | chr24:16649240-16648808 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 289 |
| Conread position: | 71-388 |
| Cow position: | chr24:12288315-12287991 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 152 |
| Conread position: | 90-388 |
| Cow position: | chr24:584073-583781 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 115-307 |
| Cow position: | chr24:6645827-6646020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 127-406 |
| Cow position: | chr24:8152868-8152583 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 140-334 |
| Cow position: | chr24:7061539-7061734 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 148-326 |
| Cow position: | chr24:5993071-5992892 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 173-401 |
| Cow position: | chr24:16376708-16376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 184-421 |
| Cow position: | chr24:14333237-14333482 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 195-413 |
| Cow position: | chr24:38636810-38637035 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 123, 176 |
| Conread position: | 209-326 |
| Cow position: | chr24:43813983-43814101 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 572-720 |
| Cow position: | chr24:13302358-13302210 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 599-718 |
| Cow position: | chr24:6336063-6336182 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 606-741 |
| Cow position: | chr24:38637762-38637895 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 35 |
Show alignments to all cow chromosomes.