Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-191 |
| Cow position: | chr25:33991091-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-198 |
| Cow position: | chr25:4761029-4760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-239 |
| Cow position: | chr25:39560318-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-287 |
| Cow position: | chr25:18027658-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-307 |
| Cow position: | chr25:18231713-18232016 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 152, 175 |
| Conread position: | 1-307 |
| Cow position: | chr25:25506618-25506922 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-314 |
| Cow position: | chr25:13780997-13781310 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr25:22147462-22147775 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr25:28030651-28030335 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 1-326 |
| Cow position: | chr25:17589581-17589261 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 1-326 |
| Cow position: | chr25:19917051-19917377 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr25:26279233-26279552 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 88 |
| Conread position: | 1-326 |
| Cow position: | chr25:32579933-32580258 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 248 |
| Conread position: | 1-326 |
| Cow position: | chr25:35362455-35362136 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 39 |
| Conread position: | 1-333 |
| Cow position: | chr25:27022599-27022265 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 0 |
| Conread position: | 1-333 |
| Cow position: | chr25:34656477-34656145 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 71 |
| Conread position: | 1-334 |
| Cow position: | chr25:17468728-17468401 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 72 |
| Conread position: | 1-350 |
| Cow position: | chr25:33665897-33665553 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 26 |
| Conread position: | 1-364 |
| Cow position: | chr25:8674883-8675243 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 336 |
| Conread position: | 1-364 |
| Cow position: | chr25:12942733-12942372 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 327 |
| Conread position: | 1-364 |
| Cow position: | chr25:18890047-18889687 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 109 |
| Conread position: | 1-367 |
| Cow position: | chr25:36240514-36240887 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 268 |
| Conread position: | 1-370 |
| Cow position: | chr25:20629545-20629902 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1-396 |
| Cow position: | chr25:26922196-26922581 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 1-413 |
| Cow position: | chr25:18255397-18254983 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 1-413 |
| Cow position: | chr25:23345372-23344965 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 245 |
| Conread position: | 1-425 |
| Cow position: | chr25:11933558-11933132 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 100 |
| Conread position: | 1-425 |
| Cow position: | chr25:18092986-18093407 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 172 |
| Conread position: | 2-242 |
| Cow position: | chr25:536827-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-306 |
| Cow position: | chr25:18421637-18421942 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 81 |
| Conread position: | 2-326 |
| Cow position: | chr25:18195130-18194805 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 3-119 |
| Cow position: | chr25:18173332-18173449 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 3-325 |
| Cow position: | chr25:20776928-20776610 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 4-334 |
| Cow position: | chr25:18275853-18275527 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 14 |
| Conread position: | 4-370 |
| Cow position: | chr25:11375377-11375016 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 82 |
| Conread position: | 5-370 |
| Cow position: | chr25:18060617-18060269 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 68 |
| Conread position: | 13-332 |
| Cow position: | chr25:18645863-18645542 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 93, 127 |
| Conread position: | 19-370 |
| Cow position: | chr25:14016152-14016498 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 83 |
| Conread position: | 28-193 |
| Cow position: | chr25:23388661-23388495 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 28-406 |
| Cow position: | chr25:12759606-12759221 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 251 |
| Conread position: | 34-283 |
| Cow position: | chr25:17877766-17877526 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 36-281 |
| Cow position: | chr25:3378751-3378511 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 134, 37 |
| Conread position: | 46-308 |
| Cow position: | chr25:24218105-24217845 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 224, 47 |
| Conread position: | 48-444 |
| Cow position: | chr25:33243844-33244225 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 82 |
| Conread position: | 67-352 |
| Cow position: | chr25:18303434-18303719 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 182 |
| Conread position: | 69-370 |
| Cow position: | chr25:9544100-9544394 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 35 |
| Conread position: | 80-315 |
| Cow position: | chr25:34014443-34014207 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 82-335 |
| Cow position: | chr25:20494405-20494651 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 87-314 |
| Cow position: | chr25:34346963-34346737 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 106-411 |
| Cow position: | chr25:19288266-19287962 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 205, 40 |
| Conread position: | 190-307 |
| Cow position: | chr25:17560476-17560359 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-326 |
| Cow position: | chr25:6172059-6172196 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 224-326 |
| Cow position: | chr25:24659444-24659547 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 569-722 |
| Cow position: | chr25:18094346-18094496 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.