Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-235 |
| Cow position: | chr27:25160615-25160852 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 1-299 |
| Cow position: | chr27:2364675-2364973 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr27:5910788-5911101 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr27:26324741-26325053 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-322 |
| Cow position: | chr27:26227219-26227535 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 127 |
| Conread position: | 1-326 |
| Cow position: | chr27:14460531-14460205 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr27:16034467-16034135 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 84 |
| Conread position: | 1-333 |
| Cow position: | chr27:25804958-25804637 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 131 |
| Conread position: | 1-334 |
| Cow position: | chr27:6006945-6007262 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 187 |
| Conread position: | 1-334 |
| Cow position: | chr27:27753271-27752937 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-343 |
| Cow position: | chr27:15541254-15541597 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-364 |
| Cow position: | chr27:893135-893493 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 49 |
| Conread position: | 1-364 |
| Cow position: | chr27:1209277-1209637 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 171 |
| Conread position: | 1-364 |
| Cow position: | chr27:9993280-9992917 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 329 |
| Conread position: | 1-367 |
| Cow position: | chr27:18560310-18560680 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 185, 152 |
| Conread position: | 1-367 |
| Cow position: | chr27:25002605-25002247 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 38 |
| Conread position: | 2-306 |
| Cow position: | chr27:23335088-23335409 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 170 |
| Conread position: | 2-413 |
| Cow position: | chr27:26035129-26034718 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 200 |
| Conread position: | 3-198 |
| Cow position: | chr27:28890654-28890847 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-333 |
| Cow position: | chr27:15278138-15277814 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 4-334 |
| Cow position: | chr27:16439252-16439587 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 4-352 |
| Cow position: | chr27:16432348-16432693 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 196 |
| Conread position: | 4-398 |
| Cow position: | chr27:22316512-22316911 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 186, 162 |
| Conread position: | 5-327 |
| Cow position: | chr27:27051611-27051936 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 59 |
| Conread position: | 7-291 |
| Cow position: | chr27:27197438-27197170 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 154 |
| Conread position: | 8-314 |
| Cow position: | chr27:27662832-27663133 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 11-310 |
| Cow position: | chr27:15638420-15638123 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 0 |
| Conread position: | 45-413 |
| Cow position: | chr27:26556034-26555662 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 7 |
| Conread position: | 72-509 |
| Cow position: | chr27:8561540-8561983 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 161-333 |
| Cow position: | chr27:28078533-28078706 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 57 |
Show alignments to all cow chromosomes.