Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-202
Cow position: chr28:7817191-7817374 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-214
Cow position: chr28:26426304-26426099 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 46, 0

Conread position: 1-296
Cow position: chr28:15920496-15920200 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 1-307
Cow position: chr28:5565832-5566129 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 14

Conread position: 1-307
Cow position: chr28:17667544-17667238 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr28:1504821-1505134 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr28:2083572-2083878 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 27

Conread position: 1-314
Cow position: chr28:5114830-5114529 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 1-314
Cow position: chr28:8378534-8378851 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 1-314
Cow position: chr28:22261181-22260868 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-315
Cow position: chr28:782365-782678 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 1-315
Cow position: chr28:12410252-12409942 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 1-315
Cow position: chr28:14705702-14705388 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 221

Conread position: 1-326
Cow position: chr28:1953100-1953425 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 43

Conread position: 1-326
Cow position: chr28:2724921-2724597 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr28:7740459-7740776 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 46

Conread position: 1-326
Cow position: chr28:7822227-7822553 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr28:12150280-12150599 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 202

Conread position: 1-326
Cow position: chr28:13440907-13440581 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr28:13459939-13460265 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr28:17388451-17388777 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 1-326
Cow position: chr28:18520491-18520164 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 69

Conread position: 1-326
Cow position: chr28:32792410-32792085 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 258

Conread position: 1-332
Cow position: chr28:5378442-5378764 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 308, 37

Conread position: 1-333
Cow position: chr28:9954106-9954436 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 80

Conread position: 1-334
Cow position: chr28:24667550-24667882 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 1-364
Cow position: chr28:1814898-1814537 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 327

Conread position: 1-364
Cow position: chr28:7001958-7002320 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 328

Conread position: 1-364
Cow position: chr28:15378022-15377662 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 215

Conread position: 1-364
Cow position: chr28:33252283-33252642 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 24

Conread position: 1-365
Cow position: chr28:10582016-10581652 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 1-367
Cow position: chr28:3192821-3192457 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 42

Conread position: 1-370
Cow position: chr28:4380869-4380509 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 83

Conread position: 2-126
Cow position: chr28:22233718-22233595 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 2-269
Cow position: chr28:17935066-17934801 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 79, 174

Conread position: 2-326
Cow position: chr28:14750519-14750842 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 26

Conread position: 2-510
Cow position: chr28:21358979-21359490 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 71

Conread position: 3-325
Cow position: chr28:24587405-24587729 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-349
Cow position: chr28:1387423-1387083 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 177

Conread position: 3-398
Cow position: chr28:22065765-22065381 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 70

Conread position: 3-509
Cow position: chr28:5812679-5813166 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 39

Conread position: 4-235
Cow position: chr28:19563100-19562872 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 4-333
Cow position: chr28:9137078-9136749 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 196

Conread position: 4-405
Cow position: chr28:34648916-34649323 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 23

Conread position: 4-454
Cow position: chr28:10619137-10618695 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 46

Conread position: 4-472
Cow position: chr28:7790315-7789836 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 421

Conread position: 5-333
Cow position: chr28:2591888-2592218 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 6-332
Cow position: chr28:10871448-10871769 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 65, 95

Conread position: 6-357
Cow position: chr28:8721474-8721123 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 234

Conread position: 7-364
Cow position: chr28:5751730-5751375 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 5

Conread position: 8-194
Cow position: chr28:15950956-15951142 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 9-294
Cow position: chr28:11026985-11026703 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 78, 38

Conread position: 10-327
Cow position: chr28:7901333-7901658 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 10-370
Cow position: chr28:9155301-9154950 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 210

Conread position: 14-314
Cow position: chr28:34593961-34594261 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-364
Cow position: chr28:1167899-1167551 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 96

Conread position: 19-326
Cow position: chr28:6780346-6780038 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 0

Conread position: 30-461
Cow position: chr28:21325790-21326216 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 73

Conread position: 33-314
Cow position: chr28:29819735-29820016 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 34-219
Cow position: chr28:17195375-17195190 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 175, 129

Conread position: 34-247
Cow position: chr28:27937451-27937243 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 34-403
Cow position: chr28:17311946-17312302 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 34, 6

Conread position: 41-314
Cow position: chr28:12232989-12232719 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 42-211
Cow position: chr28:23727144-23726974 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 144, 102

Conread position: 49-307
Cow position: chr28:567978-568230 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 36

Conread position: 65-400
Cow position: chr28:2846139-2845805 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 100

Conread position: 68-291
Cow position: chr28:5800658-5800878 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 9, 177

Conread position: 68-320
Cow position: chr28:1931948-1931695 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 68-509
Cow position: chr28:2989679-2989219 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 12

Conread position: 69-509
Cow position: chr28:5797470-5797915 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 73

Conread position: 71-335
Cow position: chr28:18181110-18180852 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 224, 159

Conread position: 81-370
Cow position: chr28:17324301-17324009 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 178

Conread position: 83-291
Cow position: chr28:18101892-18101686 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 193, 0

Conread position: 99-413
Cow position: chr28:10463085-10462762 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 80, 0

Conread position: 115-326
Cow position: chr28:485479-485267 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 120-299
Cow position: chr28:22828104-22828283 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 152, 12

Conread position: 122-370
Cow position: chr28:15682213-15682447 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 189, 13

Conread position: 136-326
Cow position: chr28:22233293-22233104 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 155
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 173, 81

Conread position: 136-498
Cow position: chr28:10071089-10071450 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 64

Conread position: 141-405
Cow position: chr28:29092875-29092612 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 137, 103

Conread position: 158-354
Cow position: chr28:13490277-13490470 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 151, 178

Conread position: 160-364
Cow position: chr28:5937609-5937806 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 200, 84

Conread position: 167-326
Cow position: chr28:30805552-30805392 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 132
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 144, 0

Conread position: 170-333
Cow position: chr28:6539123-6538958 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 139, 0

Conread position: 192-364
Cow position: chr28:26426091-26425921 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 117, 136

Conread position: 206-333
Cow position: chr28:24652942-24652813 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 112
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 105, 0

Conread position: 226-421
Cow position: chr28:11357519-11357320 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 81, 159

Conread position: 270-509
Cow position: chr28:7817377-7817631 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 129

Conread position: 284-472
Cow position: chr28:5764499-5764696 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 25, 101

Conread position: 591-731
Cow position: chr28:5813180-5813316 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 599-713
Cow position: chr28:11356877-11356764 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 77

Conread position: 599-722
Cow position: chr28:24704410-24704531 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 605-731
Cow position: chr28:10617638-10617514 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.