Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-152
Cow position: chr29:5983246-5983094 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 1-154
Cow position: chr29:31181059-31181212 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-168
Cow position: chr29:21246505-21246672 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-183
Cow position: chr29:28060729-28060548 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 1-221
Cow position: chr29:15969215-15968996 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 1-224
Cow position: chr29:24198686-24198461 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 174, 121

Conread position: 1-226
Cow position: chr29:16109663-16109887 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 76

Conread position: 1-303
Cow position: chr29:25932609-25932307 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-307
Cow position: chr29:27654350-27654052 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 1-314
Cow position: chr29:2689837-2690148 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 1-314
Cow position: chr29:6266558-6266253 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 1-314
Cow position: chr29:10824020-10823721 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1-314
Cow position: chr29:14585863-14586170 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 1-314
Cow position: chr29:19623312-19622999 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr29:19653040-19653356 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 1-314
Cow position: chr29:32539746-32540058 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 1-314
Cow position: chr29:40503043-40502734 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-314
Cow position: chr29:42650220-42650534 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 151

Conread position: 1-314
Cow position: chr29:42802080-42802394 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 151

Conread position: 1-314
Cow position: chr29:43322495-43322803 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 1-315
Cow position: chr29:10848173-10847843 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-325
Cow position: chr29:15894915-15894590 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-325
Cow position: chr29:19885005-19885330 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-326
Cow position: chr29:670121-669796 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 163

Conread position: 1-326
Cow position: chr29:7840732-7841057 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 174

Conread position: 1-326
Cow position: chr29:13582007-13582329 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 175

Conread position: 1-326
Cow position: chr29:16022465-16022791 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 1-326
Cow position: chr29:18857009-18856683 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr29:26164887-26164561 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr29:27250399-27250081 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 164

Conread position: 1-326
Cow position: chr29:27980982-27980658 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 288

Conread position: 1-326
Cow position: chr29:34799874-34799546 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 1-326
Cow position: chr29:39079770-39079451 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 46

Conread position: 1-326
Cow position: chr29:45459650-45459977 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 162

Conread position: 1-326
Cow position: chr29:45587410-45587099 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 54

Conread position: 1-330
Cow position: chr29:11841599-11841921 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 1-332
Cow position: chr29:36599388-36599058 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 219
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 124, 27

Conread position: 1-335
Cow position: chr29:30261490-30261156 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 85, 19

Conread position: 1-349
Cow position: chr29:10648316-10647968 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 327

Conread position: 1-349
Cow position: chr29:14013407-14013748 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 27

Conread position: 1-349
Cow position: chr29:14073004-14072663 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 27

Conread position: 1-370
Cow position: chr29:20251095-20251460 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 217

Conread position: 1-370
Cow position: chr29:35196608-35196965 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-386
Cow position: chr29:30811467-30811849 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 131

Conread position: 2-162
Cow position: chr29:21427118-21426962 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 132
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 2-280
Cow position: chr29:22966320-22966046 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 269, 112

Conread position: 2-326
Cow position: chr29:2099781-2100106 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 2-326
Cow position: chr29:2841432-2841112 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 133

Conread position: 2-364
Cow position: chr29:48540-48184 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 26

Conread position: 2-364
Cow position: chr29:7431279-7430923 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 242

Conread position: 2-413
Cow position: chr29:803415-802999 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 23

Conread position: 2-413
Cow position: chr29:1715182-1715594 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 48

Conread position: 3-213
Cow position: chr29:32220659-32220869 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 3-230
Cow position: chr29:13853086-13852861 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 0

Conread position: 3-276
Cow position: chr29:32949083-32949353 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 175
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 3-281
Cow position: chr29:32315978-32316256 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-326
Cow position: chr29:610675-610351 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 3-326
Cow position: chr29:35296812-35297135 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 47

Conread position: 3-333
Cow position: chr29:4056087-4056418 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 3-333
Cow position: chr29:16770066-16770392 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 56

Conread position: 3-370
Cow position: chr29:5957540-5957904 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 335

Conread position: 3-370
Cow position: chr29:43366062-43365701 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 250

Conread position: 3-413
Cow position: chr29:104511-104913 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 25

Conread position: 4-335
Cow position: chr29:2750466-2750151 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 24

Conread position: 4-354
Cow position: chr29:2466398-2466049 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 335

Conread position: 4-364
Cow position: chr29:23975778-23976136 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 324

Conread position: 4-364
Cow position: chr29:38226928-38227276 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 25

Conread position: 4-370
Cow position: chr29:9643820-9643458 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 141

Conread position: 4-370
Cow position: chr29:21543426-21543068 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 80

Conread position: 4-370
Cow position: chr29:27040825-27040471 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 36

Conread position: 5-370
Cow position: chr29:11049220-11049579 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 37

Conread position: 7-403
Cow position: chr29:19906567-19906972 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 253
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 74

Conread position: 8-291
Cow position: chr29:44468213-44468481 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 32

Conread position: 8-313
Cow position: chr29:4332170-4332466 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 219, 39

Conread position: 28-227
Cow position: chr29:4635013-4634815 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 7, 41

Conread position: 28-259
Cow position: chr29:12796400-12796172 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 25

Conread position: 28-306
Cow position: chr29:35034049-35033772 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 139

Conread position: 28-414
Cow position: chr29:30109070-30109480 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 279
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 20, 47

Conread position: 30-444
Cow position: chr29:15950223-15949809 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 17

Conread position: 33-307
Cow position: chr29:10844212-10844481 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 36

Conread position: 34-281
Cow position: chr29:13648380-13648612 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 221, 43

Conread position: 34-335
Cow position: chr29:16017182-16016884 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 34

Conread position: 43-364
Cow position: chr29:410548-410229 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 285

Conread position: 47-317
Cow position: chr29:17662885-17663155 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 68-314
Cow position: chr29:9854959-9854693 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 198

Conread position: 97-326
Cow position: chr29:34925505-34925740 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 108-341
Cow position: chr29:13669247-13669019 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 148, 79

Conread position: 142-326
Cow position: chr29:31181492-31181676 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 174, 28

Conread position: 151-426
Cow position: chr29:24709163-24708884 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 103, 38

Conread position: 158-370
Cow position: chr29:21426932-21426730 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 158, 123

Conread position: 203-496
Cow position: chr29:14086311-14086015 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 114, 40

Conread position: 205-582
Cow position: chr29:5983070-5982685 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 251

Conread position: 209-326
Cow position: chr29:15968718-15968600 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 0

Conread position: 264-415
Cow position: chr29:13648882-13649035 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 267-456
Cow position: chr29:8331131-8330943 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 70

Conread position: 345-497
Cow position: chr29:2749931-2749781 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 114

Conread position: 556-744
Cow position: chr29:105127-105311 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 133, 0

Conread position: 599-739
Cow position: chr29:14085985-14085846 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 0

Show alignments to all cow chromosomes.