Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031J08.3 |
| Conread position: | 1-142 |
| Cow position: | chr5:10844122-10843981 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr5:46005631-46005460 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:53715006-53715176 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-227 |
| Cow position: | chr5:25206990-25206762 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 1-233 |
| Cow position: | chr5:4088557-4088789 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr5:5318004-5317759 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-257 |
| Cow position: | chr5:58819882-58819626 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-283 |
| Cow position: | chr5:39872169-39872435 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-291 |
| Cow position: | chr5:1342041-1341756 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 1-295 |
| Cow position: | chr5:6158442-6158152 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-299 |
| Cow position: | chr5:3504494-3504200 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-300 |
| Cow position: | chr5:47073654-47073952 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 1-306 |
| Cow position: | chr5:31101843-31101554 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 16 |
| Conread position: | 1-307 |
| Cow position: | chr5:3964223-3964513 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-313 |
| Cow position: | chr5:26090077-26089767 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 22 |
| Conread position: | 1-313 |
| Cow position: | chr5:34696337-34696667 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 1-314 |
| Cow position: | chr5:415970-415657 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr5:2430380-2430067 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr5:37732098-37732411 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr5:49119529-49119216 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-314 |
| Cow position: | chr5:64782266-64781953 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-320 |
| Cow position: | chr5:3785556-3785857 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 54 |
| Conread position: | 1-326 |
| Cow position: | chr5:2531023-2531349 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:2914203-2914526 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 262 |
| Conread position: | 1-326 |
| Cow position: | chr5:4068742-4069066 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 260 |
| Conread position: | 1-326 |
| Cow position: | chr5:6589269-6588942 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:10776512-10776186 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:14379915-14380240 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 288 |
| Conread position: | 1-326 |
| Cow position: | chr5:24098401-24098727 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:26079466-26079140 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:31706328-31706652 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 168 |
| Conread position: | 1-326 |
| Cow position: | chr5:32772234-32772560 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:44459235-44459561 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:47831352-47831035 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 109 |
| Conread position: | 1-326 |
| Cow position: | chr5:48468524-48468201 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 83 |
| Conread position: | 1-326 |
| Cow position: | chr5:54792856-54792557 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 13 |
| Conread position: | 1-326 |
| Cow position: | chr5:58195754-58196080 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:59060373-59060696 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 163 |
| Conread position: | 1-327 |
| Cow position: | chr5:32733500-32733173 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-333 |
| Cow position: | chr5:28031235-28031563 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 43 |
| Conread position: | 1-333 |
| Cow position: | chr5:45182357-45182017 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-333 |
| Cow position: | chr5:46775830-46776166 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 177 |
| Conread position: | 1-333 |
| Cow position: | chr5:59482007-59482339 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 75 |
| Conread position: | 1-334 |
| Cow position: | chr5:27909518-27909186 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 87 |
| Conread position: | 1-334 |
| Cow position: | chr5:32945627-32945961 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 49 |
| Conread position: | 1-335 |
| Cow position: | chr5:27652229-27651895 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 1-335 |
| Cow position: | chr5:28022913-28023240 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 1-337 |
| Cow position: | chr5:4019446-4019109 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-342 |
| Cow position: | chr5:24576666-24577009 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-349 |
| Cow position: | chr5:49518412-49518758 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 169 |
| Conread position: | 1-352 |
| Cow position: | chr5:30579075-30579427 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 21 |
| Conread position: | 1-352 |
| Cow position: | chr5:34202692-34203039 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 103 |
| Conread position: | 1-355 |
| Cow position: | chr5:46738832-46738479 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 67 |
| Conread position: | 1-358 |
| Cow position: | chr5:41962486-41962123 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 1-364 |
| Cow position: | chr5:7273604-7273941 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 199 |
| Conread position: | 1-365 |
| Cow position: | chr5:32673990-32673621 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 49 |
| Conread position: | 1-365 |
| Cow position: | chr5:57482794-57482431 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 327 |
| Conread position: | 1-370 |
| Cow position: | chr5:28006956-28007307 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 24 |
| Conread position: | 1-371 |
| Cow position: | chr5:10918550-10918915 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 1-371 |
| Cow position: | chr5:45700036-45700385 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 72 |
| Conread position: | 1-401 |
| Cow position: | chr5:14346625-14346222 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 176, 59 |
| Conread position: | 1-406 |
| Cow position: | chr5:26068961-26068565 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 46 |
| Conread position: | 1-413 |
| Cow position: | chr5:25000900-25000480 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 1-413 |
| Cow position: | chr5:52433727-52434137 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 46 |
| Conread position: | 1-414 |
| Cow position: | chr5:51162667-51163074 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 25 |
| Conread position: | 1-425 |
| Cow position: | chr5:23755869-23755453 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 1-509 |
| Cow position: | chr5:49593704-49593185 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-160 |
| Cow position: | chr5:27683016-27682859 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 2-235 |
| Cow position: | chr5:55096955-55096726 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-239 |
| Cow position: | chr5:18665715-18665951 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 206 |
| Conread position: | 2-248 |
| Cow position: | chr5:6188320-6188569 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 2-298 |
| Cow position: | chr5:61273428-61273138 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 99 |
| Conread position: | 2-320 |
| Cow position: | chr5:48808962-48808643 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 0 |
| Conread position: | 2-326 |
| Cow position: | chr5:29042265-29042589 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 178 |
| Conread position: | 2-326 |
| Cow position: | chr5:46663752-46664081 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 2-329 |
| Cow position: | chr5:28335078-28334743 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 2-425 |
| Cow position: | chr5:51319493-51319068 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 3-180 |
| Cow position: | chr5:58061083-58060909 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-184 |
| Cow position: | chr5:23690926-23690749 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 142 |
| Conread position: | 3-307 |
| Cow position: | chr5:24330045-24330332 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 57 |
| Conread position: | 3-311 |
| Cow position: | chr5:14188413-14188112 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 3-325 |
| Cow position: | chr5:54932463-54932141 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 40 |
| Conread position: | 3-333 |
| Cow position: | chr5:49182030-49182355 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 41 |
| Conread position: | 4-193 |
| Cow position: | chr5:56857940-56857761 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 4-245 |
| Cow position: | chr5:32249808-32250041 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-266 |
| Cow position: | chr5:41023197-41022941 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 4-326 |
| Cow position: | chr5:46644442-46644765 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 4-333 |
| Cow position: | chr5:26769566-26769890 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 84 |
| Conread position: | 4-334 |
| Cow position: | chr5:39165042-39164714 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 47 |
| Conread position: | 4-370 |
| Cow position: | chr5:20972277-20971928 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 174 |
| Conread position: | 4-370 |
| Cow position: | chr5:29009115-29009471 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 24 |
| Conread position: | 4-499 |
| Cow position: | chr5:46659487-46659974 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 18 |
| Conread position: | 5-386 |
| Cow position: | chr5:14659337-14658958 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 23 |
| Conread position: | 6-216 |
| Cow position: | chr5:57366266-57366057 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 6-333 |
| Cow position: | chr5:9686671-9686341 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 6-373 |
| Cow position: | chr5:41551170-41550805 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 332 |
| Conread position: | 7-426 |
| Cow position: | chr5:46630682-46630268 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 61 |
| Conread position: | 8-205 |
| Cow position: | chr5:52805126-52805322 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 8-307 |
| Cow position: | chr5:27038986-27039275 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 10-416 |
| Cow position: | chr5:24108825-24108434 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 186, 8 |
| Conread position: | 14-326 |
| Cow position: | chr5:55627753-55628064 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 131 |
| Conread position: | 16-342 |
| Cow position: | chr5:53626998-53626666 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 19-286 |
| Cow position: | chr5:5786829-5786570 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 27-416 |
| Cow position: | chr5:31202839-31202453 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 282, 37 |
| Conread position: | 28-201 |
| Cow position: | chr5:27060465-27060296 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 28-284 |
| Cow position: | chr5:72489107-72488846 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 30-366 |
| Cow position: | chr5:57977037-57977376 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 194 |
| Conread position: | 30-413 |
| Cow position: | chr5:49128997-49129389 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 34-196 |
| Cow position: | chr5:21918165-21918324 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 119, 76 |
| Conread position: | 34-397 |
| Cow position: | chr5:26054543-26054900 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 35-252 |
| Cow position: | chr5:18653827-18654048 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 40-314 |
| Cow position: | chr5:27001403-27001672 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 40-335 |
| Cow position: | chr5:41358948-41358659 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 40-425 |
| Cow position: | chr5:39247591-39247228 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 106 |
| Conread position: | 41-314 |
| Cow position: | chr5:73489769-73489496 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-278 |
| Cow position: | chr5:18897791-18898026 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 132 |
| Conread position: | 44-330 |
| Cow position: | chr5:29436173-29435886 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 11 |
| Conread position: | 44-333 |
| Cow position: | chr5:51861296-51861015 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 265, 35 |
| Conread position: | 65-413 |
| Cow position: | chr5:27489064-27489418 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 52 |
| Conread position: | 68-405 |
| Cow position: | chr5:41529768-41529428 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 45 |
| Conread position: | 69-305 |
| Cow position: | chr5:12644116-12643886 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 69-416 |
| Cow position: | chr5:58334774-58334427 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 70-325 |
| Cow position: | chr5:23960492-23960238 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 239, 14 |
| Conread position: | 84-406 |
| Cow position: | chr5:61020009-61019700 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 92 |
| Conread position: | 85-401 |
| Cow position: | chr5:51771462-51771135 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 85, 294 |
| Conread position: | 86-307 |
| Cow position: | chr5:76123737-76123523 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 87-278 |
| Cow position: | chr5:57517588-57517399 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 100-352 |
| Cow position: | chr5:17774189-17773937 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-370 |
| Cow position: | chr5:4385108-4385363 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 209, 23 |
| Conread position: | 125-336 |
| Cow position: | chr5:47826273-47826063 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 204 |
| Conread position: | 136-333 |
| Cow position: | chr5:27570000-27570197 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 25 |
| Conread position: | 146-326 |
| Cow position: | chr5:10843522-10843341 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 147-413 |
| Cow position: | chr5:23228131-23228396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 164, 24 |
| Conread position: | 160-343 |
| Cow position: | chr5:9042949-9043133 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 164-350 |
| Cow position: | chr5:18271523-18271713 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 165-413 |
| Cow position: | chr5:27682828-27682568 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 80 |
| Conread position: | 175-444 |
| Cow position: | chr5:18117649-18117383 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 143, 85 |
| Conread position: | 182-327 |
| Cow position: | chr5:25206759-25206605 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 195-425 |
| Cow position: | chr5:27059178-27058939 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 195-425 |
| Cow position: | chr5:27060081-27059842 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 208-326 |
| Cow position: | chr5:18665953-18666072 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 210-333 |
| Cow position: | chr5:6611972-6612097 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 210-509 |
| Cow position: | chr5:40053420-40053709 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 62 |
| Conread position: | 215-326 |
| Cow position: | chr5:18122502-18122390 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 215-343 |
| Cow position: | chr5:10482814-10482943 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 231-326 |
| Cow position: | chr5:35299835-35299931 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 232-326 |
| Cow position: | chr5:56145038-56144943 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 331-509 |
| Cow position: | chr5:61272773-61272597 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 169, 14 |
| Conread position: | 602-744 |
| Cow position: | chr5:41528794-41528649 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 76 |
| Conread position: | 607-730 |
| Cow position: | chr5:61272584-61272463 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 607-744 |
| Cow position: | chr5:41961966-41961831 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 119, 54 |
Show alignments to all cow chromosomes.