Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-160
Cow position:
Alignm length: 160
Alignm identity: 134
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position:
Alignm length: 186
Alignm identity: 153
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 55, 72

Conread position: 1-242
Cow position:
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 124, 27

Conread position: 1-259
Cow position:
Alignm length: 260
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-265
Cow position:
Alignm length: 265
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-281
Cow position:
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-306
Cow position:
Alignm length: 308
Alignm identity: 214
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 60, 50

Conread position: 1-307
Cow position:
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-307
Cow position:
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-307
Cow position:
Alignm length: 318
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 72

Conread position: 1-307
Cow position:
Alignm length: 309
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 154, 43

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 1-325
Cow position:
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 72

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 85

Conread position: 1-326
Cow position:
Alignm length: 333
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 105

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 45

Conread position: 1-326
Cow position:
Alignm length: 329
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 73

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 331
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 0

Conread position: 1-326
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 160

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 127

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 49

Conread position: 1-326
Cow position:
Alignm length: 331
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-326
Cow position:
Alignm length: 331
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 67

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 21

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 143

Conread position: 1-326
Cow position:
Alignm length: 337
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-333
Cow position:
Alignm length: 341
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 145

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 175

Conread position: 1-333
Cow position:
Alignm length: 341
Alignm identity: 231
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 76, 63

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 72

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-334
Cow position:
Alignm length: 336
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 121

Conread position: 1-334
Cow position:
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-343
Cow position:
Alignm length: 344
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-364
Cow position:
Alignm length: 366
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 343

Conread position: 1-364
Cow position:
Alignm length: 367
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 50

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 48

Conread position: 1-364
Cow position:
Alignm length: 366
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 297

Conread position: 1-364
Cow position:
Alignm length: 369
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 105

Conread position: 1-400
Cow position:
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 271

Conread position: 1-411
Cow position:
Alignm length: 419
Alignm identity: 283
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 175

Conread position: 1-413
Cow position:
Alignm length: 420
Alignm identity: 273
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 285, 57

Conread position: 1-415
Cow position:
Alignm length: 431
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 172

Conread position: 1-422
Cow position:
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 58

Conread position: 1-498
Cow position:
Alignm length: 508
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 1-509
Cow position:
Alignm length: 526
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 159

Conread position: 2-314
Cow position:
Alignm length: 316
Alignm identity: 220
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 77, 21

Conread position: 2-317
Cow position:
Alignm length: 316
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 2-326
Cow position:
Alignm length: 327
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 173

Conread position: 2-326
Cow position:
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 244

Conread position: 2-326
Cow position:
Alignm length: 326
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 74

Conread position: 2-332
Cow position:
Alignm length: 347
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 177, 23

Conread position: 2-355
Cow position:
Alignm length: 363
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 85

Conread position: 2-370
Cow position:
Alignm length: 370
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 41

Conread position: 2-413
Cow position:
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 83

Conread position: 3-325
Cow position:
Alignm length: 324
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 3-326
Cow position:
Alignm length: 325
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 267

Conread position: 3-326
Cow position:
Alignm length: 324
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 3-337
Cow position:
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 14

Conread position: 3-362
Cow position:
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 72

Conread position: 3-362
Cow position:
Alignm length: 380
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 199

Conread position: 3-364
Cow position:
Alignm length: 363
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 325

Conread position: 3-413
Cow position:
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 49

Conread position: 4-166
Cow position:
Alignm length: 164
Alignm identity: 135
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 0

Conread position: 4-177
Cow position:
Alignm length: 174
Alignm identity: 137
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 130, 0

Conread position: 4-290
Cow position:
Alignm length: 287
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 4-307
Cow position:
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 4-307
Cow position:
Alignm length: 307
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 4-314
Cow position:
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 4-334
Cow position:
Alignm length: 340
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 4-353
Cow position:
Alignm length: 351
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 172

Conread position: 4-445
Cow position:
Alignm length: 445
Alignm identity: 288
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 71

Conread position: 5-242
Cow position:
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 207, 13

Conread position: 6-335
Cow position:
Alignm length: 330
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 8-287
Cow position:
Alignm length: 281
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 8-326
Cow position:
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-326
Cow position:
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-370
Cow position:
Alignm length: 365
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 329

Conread position: 9-326
Cow position:
Alignm length: 319
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 10-314
Cow position:
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 10-326
Cow position:
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 40

Conread position: 14-247
Cow position:
Alignm length: 234
Alignm identity: 168
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 14-334
Cow position:
Alignm length: 328
Alignm identity: 228
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 220, 189

Conread position: 16-255
Cow position:
Alignm length: 242
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 65

Conread position: 19-326
Cow position:
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 115

Conread position: 27-291
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 40, 54

Conread position: 27-314
Cow position:
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 28-184
Cow position:
Alignm length: 158
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 133, 111

Conread position: 29-231
Cow position:
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 29-307
Cow position:
Alignm length: 279
Alignm identity: 178
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 30-333
Cow position:
Alignm length: 316
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 7, 42

Conread position: 31-454
Cow position:
Alignm length: 438
Alignm identity: 289
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 149, 236

Conread position: 34-188
Cow position:
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 34-280
Cow position:
Alignm length: 247
Alignm identity: 164
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 34-289
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 23

Conread position: 34-291
Cow position:
Alignm length: 259
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 40

Conread position: 34-307
Cow position:
Alignm length: 274
Alignm identity: 179
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 34-392
Cow position:
Alignm length: 373
Alignm identity: 255
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 146, 51

Conread position: 40-189
Cow position:
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 40-335
Cow position:
Alignm length: 297
Alignm identity: 208
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 267, 207

Conread position: 40-335
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 223, 33

Conread position: 40-392
Cow position:
Alignm length: 373
Alignm identity: 245
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 48-413
Cow position:
Alignm length: 369
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 102

Conread position: 48-432
Cow position:
Alignm length: 388
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 36

Conread position: 55-236
Cow position:
Alignm length: 185
Alignm identity: 147
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 41

Conread position: 65-357
Cow position:
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 23

Conread position: 65-509
Cow position:
Alignm length: 452
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 81

Conread position: 67-201
Cow position:
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 87-370
Cow position:
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 135

Conread position: 97-332
Cow position:
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 79

Conread position: 102-299
Cow position:
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 107-326
Cow position:
Alignm length: 221
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 121-413
Cow position:
Alignm length: 297
Alignm identity: 198
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 229, 43

Conread position: 157-509
Cow position:
Alignm length: 359
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 151

Conread position: 166-327
Cow position:
Alignm length: 164
Alignm identity: 133
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 143, 44

Conread position: 182-459
Cow position:
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 57

Conread position: 200-311
Cow position:
Alignm length: 113
Alignm identity: 99
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 104, 0

Conread position: 203-364
Cow position:
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 0

Conread position: 204-314
Cow position:
Alignm length: 111
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 207-314
Cow position:
Alignm length: 108
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 207-326
Cow position:
Alignm length: 121
Alignm identity: 99
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 209-370
Cow position:
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 128

Conread position: 211-333
Cow position:
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 228-326
Cow position:
Alignm length: 100
Alignm identity: 86
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 573-722
Cow position:
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 591-722
Cow position:
Alignm length: 132
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 591-737
Cow position:
Alignm length: 147
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.