Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-160
Cow position: chr6:50497564-50497405 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 134
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position: chr6:42723032-42722849 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 55, 72

Conread position: 1-242
Cow position: chr6:39162093-39162320 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 124, 27

Conread position: 1-259
Cow position: chr6:57870109-57869851 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-265
Cow position: chr6:42927278-42927540 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-281
Cow position: chr6:21971568-21971860 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 1-306
Cow position: chr6:60170473-60170167 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 60, 50

Conread position: 1-307
Cow position: chr6:5951342-5951046 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-307
Cow position: chr6:28274878-28275182 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-307
Cow position: chr6:33388728-33389041 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 72

Conread position: 1-307
Cow position: chr6:57009967-57009662 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 154, 43

Conread position: 1-314
Cow position: chr6:3278056-3277743 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position: chr6:8761406-8761098 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-314
Cow position: chr6:17045953-17046262 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 1-314
Cow position: chr6:65841489-65841791 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 1-325
Cow position: chr6:13276697-13277019 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 72

Conread position: 1-326
Cow position: chr6:2374598-2374920 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-326
Cow position: chr6:2554602-2554926 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 85

Conread position: 1-326
Cow position: chr6:8201626-8201957 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 105

Conread position: 1-326
Cow position: chr6:13103952-13104278 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position: chr6:13846942-13847252 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 45

Conread position: 1-326
Cow position: chr6:13943805-13944129 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position: chr6:20561215-20560892 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 73

Conread position: 1-326
Cow position: chr6:24238959-24239285 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr6:27169471-27169801 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 0

Conread position: 1-326
Cow position: chr6:27469146-27469467 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 1-326
Cow position: chr6:27530109-27529787 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 160

Conread position: 1-326
Cow position: chr6:28491619-28491294 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 127

Conread position: 1-326
Cow position: chr6:33459759-33460083 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 49

Conread position: 1-326
Cow position: chr6:34127243-34127573 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-326
Cow position: chr6:34893115-34892786 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 67

Conread position: 1-326
Cow position: chr6:35876824-35876498 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 1-326
Cow position: chr6:55544432-55544107 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 21

Conread position: 1-326
Cow position: chr6:58409018-58408692 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position: chr6:65927831-65928156 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 143

Conread position: 1-326
Cow position: chr6:68026676-68027012 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-333
Cow position: chr6:17598385-17598051 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-333
Cow position: chr6:26670969-26670630 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 145

Conread position: 1-333
Cow position: chr6:28063232-28063564 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 175

Conread position: 1-333
Cow position: chr6:32074841-32074508 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 76, 63

Conread position: 1-333
Cow position: chr6:44028942-44029267 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 72

Conread position: 1-333
Cow position: chr6:65822232-65821898 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-334
Cow position: chr6:19453817-19454143 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 121

Conread position: 1-334
Cow position: chr6:44150662-44150327 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 1-343
Cow position: chr6:7866857-7866514 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-364
Cow position: chr6:3889585-3889223 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 343

Conread position: 1-364
Cow position: chr6:15141281-15140925 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 50

Conread position: 1-364
Cow position: chr6:15280648-15280297 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 48

Conread position: 1-364
Cow position: chr6:30275284-30274924 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 297

Conread position: 1-364
Cow position: chr6:36525937-36526303 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 105

Conread position: 1-400
Cow position: chr6:32330897-32330496 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 271

Conread position: 1-411
Cow position: chr6:37642294-37642692 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 283
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 175

Conread position: 1-413
Cow position: chr6:16672280-16672693 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 285, 57

Conread position: 1-415
Cow position: chr6:28474596-28475025 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 172

Conread position: 1-422
Cow position: chr6:7179795-7179374 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 58

Conread position: 1-498
Cow position: chr6:37116033-37116534 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 1-509
Cow position: chr6:38232170-38232688 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 159

Conread position: 2-314
Cow position: chr6:12528729-12529035 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 77, 21

Conread position: 2-317
Cow position: chr6:25214155-25214468 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 2-326
Cow position: chr6:331573-331249 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 173

Conread position: 2-326
Cow position: chr6:3488505-3488179 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 244

Conread position: 2-326
Cow position: chr6:43617612-43617935 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 74

Conread position: 2-332
Cow position: chr6:52116151-52116493 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 177, 23

Conread position: 2-355
Cow position: chr6:40554697-40554339 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 85

Conread position: 2-370
Cow position: chr6:6566508-6566864 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 41

Conread position: 2-413
Cow position: chr6:1100691-1100275 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 83

Conread position: 3-325
Cow position: chr6:65880763-65881086 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 3-326
Cow position: chr6:701851-702170 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 267

Conread position: 3-326
Cow position: chr6:7141575-7141267 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 3-337
Cow position: chr6:33900727-33900394 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 14

Conread position: 3-362
Cow position: chr6:41552919-41553260 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 72

Conread position: 3-362
Cow position: chr6:65900022-65899645 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 199

Conread position: 3-364
Cow position: chr6:29311387-29311746 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 325

Conread position: 3-413
Cow position: chr6:59741153-59740746 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 49

Conread position: 4-166
Cow position: chr6:10641022-10641185 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 135
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 0

Conread position: 4-177
Cow position: chr6:68362422-68362252 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 130, 0

Conread position: 4-290
Cow position: chr6:11277793-11277513 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 4-307
Cow position: chr6:43793873-43793554 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 4-307
Cow position: chr6:66231700-66231995 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 46

Conread position: 4-314
Cow position: chr6:13317588-13317291 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 4-334
Cow position: chr6:30478988-30479327 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 4-353
Cow position: chr6:59919381-59919038 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 172

Conread position: 4-445
Cow position: chr6:66539709-66540129 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 288
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 71

Conread position: 5-242
Cow position: chr6:19338249-19338022 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 207, 13

Conread position: 6-335
Cow position: chr6:10630365-10630676 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 8-287
Cow position: chr6:913542-913822 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 8-326
Cow position: chr6:1405337-1405018 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-326
Cow position: chr6:1412039-1411720 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-370
Cow position: chr6:10558759-10558400 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 329

Conread position: 9-326
Cow position: chr6:16051782-16052100 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 10-314
Cow position: chr6:64715134-64715436 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 10-326
Cow position: chr6:3148908-3149224 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 40

Conread position: 14-247
Cow position: chr6:63198167-63197936 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 14-334
Cow position: chr6:34203414-34203732 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 220, 189

Conread position: 16-255
Cow position: chr6:17932023-17932262 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 65

Conread position: 19-326
Cow position: chr6:39908441-39908747 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 115

Conread position: 27-291
Cow position: chr6:31568879-31568621 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 40, 54

Conread position: 27-314
Cow position: chr6:47043284-47042992 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 28-184
Cow position: chr6:40240342-40240498 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 133, 111

Conread position: 29-231
Cow position: chr6:49520459-49520256 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 29-307
Cow position: chr6:36229014-36228742 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 178
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 30-333
Cow position: chr6:11402958-11403270 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 7, 42

Conread position: 31-454
Cow position: chr6:25359430-25359863 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 289
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 149, 236

Conread position: 34-188
Cow position: chr6:52804453-52804606 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 34-280
Cow position: chr6:44524829-44524595 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 34-289
Cow position: chr6:35722291-35722544 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 23

Conread position: 34-291
Cow position: chr6:34024737-34024988 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 40

Conread position: 34-307
Cow position: chr6:15896504-15896241 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 34-392
Cow position: chr6:15476204-15476569 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 146, 51

Conread position: 40-189
Cow position: chr6:52692988-52693137 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 40-335
Cow position: chr6:526171-526463 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 267, 207

Conread position: 40-335
Cow position: chr6:35433471-35433759 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 223, 33

Conread position: 40-392
Cow position: chr6:62397088-62397460 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 48-413
Cow position: chr6:35420654-35420298 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 102

Conread position: 48-432
Cow position: chr6:12095459-12095085 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 36

Conread position: 55-236
Cow position: chr6:12092946-12092763 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 41

Conread position: 65-357
Cow position: chr6:40315015-40315296 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 23

Conread position: 65-509
Cow position: chr6:6476524-6476087 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 81

Conread position: 67-201
Cow position: chr6:65910746-65910881 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 87-370
Cow position: chr6:28105873-28105586 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 135

Conread position: 97-332
Cow position: chr6:6155677-6155910 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 79

Conread position: 102-299
Cow position: chr6:17099708-17099508 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 107-326
Cow position: chr6:40251663-40251883 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 121-413
Cow position: chr6:1383851-1383568 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 229, 43

Conread position: 157-509
Cow position: chr6:43608308-43607954 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 151

Conread position: 166-327
Cow position: chr6:65007747-65007907 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 143, 44

Conread position: 182-459
Cow position: chr6:10641235-10641517 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 57

Conread position: 200-311
Cow position: chr6:9738793-9738905 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 99
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 104, 0

Conread position: 203-364
Cow position: chr6:1822544-1822379 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 0

Conread position: 204-314
Cow position: chr6:58026855-58026964 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 207-314
Cow position: chr6:39437647-39437754 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 207-326
Cow position: chr6:10499624-10499504 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 209-370
Cow position: chr6:52693125-52693282 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 128

Conread position: 211-333
Cow position: chr6:12650845-12650721 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 228-326
Cow position: chr6:40275209-40275308 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 573-722
Cow position: chr6:10643627-10643770 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 591-722
Cow position: chr6:6476067-6475939 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 591-737
Cow position: chr6:42616548-42616690 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.