Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-167
Cow position:
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 1-175
Cow position:
Alignm length: 175
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 171, 0

Conread position: 1-177
Cow position:
Alignm length: 177
Alignm identity: 146
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 90, 0

Conread position: 1-183
Cow position:
Alignm length: 183
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 1-214
Cow position:
Alignm length: 215
Alignm identity: 137
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 117, 5

Conread position: 1-250
Cow position:
Alignm length: 251
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 41

Conread position: 1-269
Cow position:
Alignm length: 269
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 1-274
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 1-279
Cow position:
Alignm length: 279
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-291
Cow position:
Alignm length: 291
Alignm identity: 197
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 1-307
Cow position:
Alignm length: 307
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-307
Cow position:
Alignm length: 307
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-314
Cow position:
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 1-314
Cow position:
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 43

Conread position: 1-314
Cow position:
Alignm length: 317
Alignm identity: 216
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 277, 0

Conread position: 1-320
Cow position:
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 46

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 260

Conread position: 1-326
Cow position:
Alignm length: 329
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 243

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position:
Alignm length: 329
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 255

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 186

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 206

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 46

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-335
Cow position:
Alignm length: 338
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 18

Conread position: 1-336
Cow position:
Alignm length: 340
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 136, 85

Conread position: 1-343
Cow position:
Alignm length: 344
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-343
Cow position:
Alignm length: 344
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 37

Conread position: 1-364
Cow position:
Alignm length: 366
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 262

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 335

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 279

Conread position: 1-367
Cow position:
Alignm length: 369
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 336

Conread position: 1-370
Cow position:
Alignm length: 371
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 65

Conread position: 1-370
Cow position:
Alignm length: 373
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 337

Conread position: 1-372
Cow position:
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 32

Conread position: 1-373
Cow position:
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 46

Conread position: 1-384
Cow position:
Alignm length: 396
Alignm identity: 272
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 123, 47

Conread position: 1-394
Cow position:
Alignm length: 401
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 143

Conread position: 1-399
Cow position:
Alignm length: 400
Alignm identity: 259
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 308, 5

Conread position: 1-411
Cow position:
Alignm length: 427
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 37

Conread position: 1-415
Cow position:
Alignm length: 434
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 75

Conread position: 1-425
Cow position:
Alignm length: 429
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 89

Conread position: 1-425
Cow position:
Alignm length: 427
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 73

Conread position: 1-441
Cow position:
Alignm length: 444
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 145

Conread position: 1-442
Cow position:
Alignm length: 446
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 37

Conread position: 1-444
Cow position:
Alignm length: 445
Alignm identity: 293
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 156, 42

Conread position: 1-447
Cow position:
Alignm length: 459
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 197

Conread position: 1-495
Cow position:
Alignm length: 504
Alignm identity: 320
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 308, 27

Conread position: 1-496
Cow position:
Alignm length: 499
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 5

Conread position: 1-508
Cow position:
Alignm length: 512
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 28

Conread position: 2-164
Cow position:
Alignm length: 164
Alignm identity: 138
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 63, 76

Conread position: 2-298
Cow position:
Alignm length: 298
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 2-307
Cow position:
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 84

Conread position: 2-327
Cow position:
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 49

Conread position: 2-333
Cow position:
Alignm length: 333
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 26

Conread position: 2-427
Cow position:
Alignm length: 431
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 76

Conread position: 3-102
Cow position:
Alignm length: 100
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-221
Cow position:
Alignm length: 220
Alignm identity: 164
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 62, 74

Conread position: 3-238
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 69, 0

Conread position: 3-241
Cow position:
Alignm length: 239
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 129, 0

Conread position: 3-257
Cow position:
Alignm length: 257
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 187, 79

Conread position: 3-335
Cow position:
Alignm length: 333
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 4-185
Cow position:
Alignm length: 182
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 4-314
Cow position:
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 4-333
Cow position:
Alignm length: 337
Alignm identity: 212
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 235, 19

Conread position: 4-333
Cow position:
Alignm length: 332
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 260

Conread position: 4-370
Cow position:
Alignm length: 369
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 64

Conread position: 4-370
Cow position:
Alignm length: 369
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 205

Conread position: 4-406
Cow position:
Alignm length: 410
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 36

Conread position: 5-280
Cow position:
Alignm length: 277
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 76

Conread position: 5-307
Cow position:
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 5-325
Cow position:
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 196

Conread position: 6-296
Cow position:
Alignm length: 292
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 278

Conread position: 6-315
Cow position:
Alignm length: 310
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-326
Cow position:
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 48

Conread position: 6-470
Cow position:
Alignm length: 476
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 38

Conread position: 8-134
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 8-326
Cow position:
Alignm length: 322
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 8-406
Cow position:
Alignm length: 407
Alignm identity: 264
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 301, 124

Conread position: 10-326
Cow position:
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 179

Conread position: 11-429
Cow position:
Alignm length: 449
Alignm identity: 301
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 143, 15

Conread position: 14-291
Cow position:
Alignm length: 279
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 210, 125

Conread position: 14-315
Cow position:
Alignm length: 302
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-335
Cow position:
Alignm length: 325
Alignm identity: 226
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 165, 12

Conread position: 14-411
Cow position:
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 136

Conread position: 18-357
Cow position:
Alignm length: 341
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 9

Conread position: 18-424
Cow position:
Alignm length: 421
Alignm identity: 288
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 19

Conread position: 23-224
Cow position:
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 25-401
Cow position:
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 44

Conread position: 27-290
Cow position:
Alignm length: 265
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 110

Conread position: 28-444
Cow position:
Alignm length: 428
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 8, 46

Conread position: 30-334
Cow position:
Alignm length: 307
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 30-400
Cow position:
Alignm length: 378
Alignm identity: 263
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 303, 10

Conread position: 30-508
Cow position:
Alignm length: 500
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 211

Conread position: 33-277
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 34-332
Cow position:
Alignm length: 304
Alignm identity: 200
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 19, 84

Conread position: 34-335
Cow position:
Alignm length: 305
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 52

Conread position: 34-403
Cow position:
Alignm length: 371
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 65

Conread position: 34-406
Cow position:
Alignm length: 382
Alignm identity: 257
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 103

Conread position: 34-425
Cow position:
Alignm length: 400
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 101

Conread position: 39-326
Cow position:
Alignm length: 294
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 222

Conread position: 40-371
Cow position:
Alignm length: 342
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 15

Conread position: 40-509
Cow position:
Alignm length: 474
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 148

Conread position: 41-326
Cow position:
Alignm length: 287
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 230

Conread position: 44-252
Cow position:
Alignm length: 209
Alignm identity: 160
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 46-313
Cow position:
Alignm length: 272
Alignm identity: 196
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 28, 228

Conread position: 49-392
Cow position:
Alignm length: 355
Alignm identity: 231
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 121, 57

Conread position: 50-326
Cow position:
Alignm length: 278
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 0

Conread position: 53-227
Cow position:
Alignm length: 175
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 68-347
Cow position:
Alignm length: 286
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 113

Conread position: 68-406
Cow position:
Alignm length: 346
Alignm identity: 238
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 248, 107

Conread position: 69-509
Cow position:
Alignm length: 449
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 31

Conread position: 71-334
Cow position:
Alignm length: 265
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 73-334
Cow position:
Alignm length: 266
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 223

Conread position: 74-326
Cow position:
Alignm length: 254
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 0

Conread position: 82-224
Cow position:
Alignm length: 144
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 106, 52

Conread position: 93-413
Cow position:
Alignm length: 328
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 218, 93

Conread position: 97-326
Cow position:
Alignm length: 231
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 0

Conread position: 106-349
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 109-498
Cow position:
Alignm length: 397
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 96

Conread position: 115-425
Cow position:
Alignm length: 318
Alignm identity: 224
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 194, 36

Conread position: 121-406
Cow position:
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 134-335
Cow position:
Alignm length: 207
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 48, 38

Conread position: 141-432
Cow position:
Alignm length: 302
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 67

Conread position: 145-401
Cow position:
Alignm length: 263
Alignm identity: 175
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 164, 34

Conread position: 166-509
Cow position:
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 218

Conread position: 190-334
Cow position:
Alignm length: 146
Alignm identity: 120
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 119, 22

Conread position: 196-326
Cow position:
Alignm length: 132
Alignm identity: 112
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 115, 14

Conread position: 201-543
Cow position:
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 226

Conread position: 263-425
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 557-744
Cow position:
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 27

Conread position: 569-737
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 112

Conread position: 590-736
Cow position:
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 89

Conread position: 599-731
Cow position:
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 102, 80

Conread position: 599-736
Cow position:
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 82

Show alignments to all cow chromosomes.