Cow genome map

Conread name: Ss1.1-Pig4-TMW8031J08.3

Conread position: 1-132
Cow position:
Alignm length: 135
Alignm identity: 110
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 1-155
Cow position:
Alignm length: 155
Alignm identity: 124
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 1-180
Cow position:
Alignm length: 180
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-181
Cow position:
Alignm length: 181
Alignm identity: 143
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-208
Cow position:
Alignm length: 208
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-214
Cow position:
Alignm length: 215
Alignm identity: 154
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 61, 52

Conread position: 1-236
Cow position:
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-252
Cow position:
Alignm length: 255
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 0

Conread position: 1-281
Cow position:
Alignm length: 283
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 1-292
Cow position:
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 47

Conread position: 1-292
Cow position:
Alignm length: 304
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 137, 24

Conread position: 1-296
Cow position:
Alignm length: 296
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-301
Cow position:
Alignm length: 302
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-314
Cow position:
Alignm length: 315
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 1-314
Cow position:
Alignm length: 315
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 21

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-314
Cow position:
Alignm length: 314
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-319
Cow position:
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-320
Cow position:
Alignm length: 323
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-325
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 17

Conread position: 1-325
Cow position:
Alignm length: 326
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 334
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 1-326
Cow position:
Alignm length: 326
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 1-326
Cow position:
Alignm length: 330
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 210

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 46

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 156

Conread position: 1-326
Cow position:
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 72

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 24

Conread position: 1-326
Cow position:
Alignm length: 330
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 191

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 175

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 164

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 43

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 9

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 100

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 46

Conread position: 1-327
Cow position:
Alignm length: 328
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 204

Conread position: 1-327
Cow position:
Alignm length: 328
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 200

Conread position: 1-332
Cow position:
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 41

Conread position: 1-332
Cow position:
Alignm length: 334
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 1-333
Cow position:
Alignm length: 337
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 72

Conread position: 1-333
Cow position:
Alignm length: 336
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 41

Conread position: 1-348
Cow position:
Alignm length: 349
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 336

Conread position: 1-350
Cow position:
Alignm length: 351
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 0

Conread position: 1-355
Cow position:
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 176

Conread position: 1-364
Cow position:
Alignm length: 366
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 336

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 257

Conread position: 1-364
Cow position:
Alignm length: 378
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 349

Conread position: 1-364
Cow position:
Alignm length: 365
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 268

Conread position: 1-364
Cow position:
Alignm length: 366
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 186

Conread position: 1-370
Cow position:
Alignm length: 371
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 75

Conread position: 1-370
Cow position:
Alignm length: 374
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 62

Conread position: 1-392
Cow position:
Alignm length: 393
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 327

Conread position: 1-405
Cow position:
Alignm length: 413
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 27

Conread position: 1-415
Cow position:
Alignm length: 434
Alignm identity: 279
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 77, 27

Conread position: 1-629
Cow position:
Alignm length: 629
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 0

Conread position: 1-737
Cow position:
Alignm length: 770
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 11

Conread position: 2-286
Cow position:
Alignm length: 285
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 2-307
Cow position:
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 2-314
Cow position:
Alignm length: 313
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 2-315
Cow position:
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 66

Conread position: 2-326
Cow position:
Alignm length: 326
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 238

Conread position: 2-356
Cow position:
Alignm length: 365
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 133

Conread position: 2-370
Cow position:
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 48

Conread position: 2-734
Cow position:
Alignm length: 760
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 41

Conread position: 3-149
Cow position:
Alignm length: 147
Alignm identity: 123
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 3-291
Cow position:
Alignm length: 290
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 213

Conread position: 3-403
Cow position:
Alignm length: 405
Alignm identity: 271
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 292, 44

Conread position: 3-413
Cow position:
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 47

Conread position: 3-414
Cow position:
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 25

Conread position: 4-334
Cow position:
Alignm length: 332
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 73

Conread position: 4-355
Cow position:
Alignm length: 365
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 340

Conread position: 4-358
Cow position:
Alignm length: 357
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 33

Conread position: 4-364
Cow position:
Alignm length: 362
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 60

Conread position: 5-276
Cow position:
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 97

Conread position: 6-286
Cow position:
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 9

Conread position: 6-530
Cow position:
Alignm length: 535
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 64

Conread position: 8-325
Cow position:
Alignm length: 323
Alignm identity: 210
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 5, 15

Conread position: 8-333
Cow position:
Alignm length: 327
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 14-183
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 14-337
Cow position:
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 99

Conread position: 14-432
Cow position:
Alignm length: 427
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 109

Conread position: 15-231
Cow position:
Alignm length: 217
Alignm identity: 153
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 19-185
Cow position:
Alignm length: 167
Alignm identity: 131
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 36, 0

Conread position: 19-330
Cow position:
Alignm length: 313
Alignm identity: 209
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 290, 24

Conread position: 20-335
Cow position:
Alignm length: 322
Alignm identity: 226
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 61, 18

Conread position: 25-326
Cow position:
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 229

Conread position: 28-181
Cow position:
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 29-326
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 0

Conread position: 34-291
Cow position:
Alignm length: 265
Alignm identity: 176
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 127, 45

Conread position: 34-353
Cow position:
Alignm length: 323
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 0

Conread position: 38-314
Cow position:
Alignm length: 277
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 38-343
Cow position:
Alignm length: 307
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 40-269
Cow position:
Alignm length: 231
Alignm identity: 164
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 214, 32

Conread position: 40-288
Cow position:
Alignm length: 259
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 139, 204

Conread position: 43-388
Cow position:
Alignm length: 349
Alignm identity: 235
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 227, 187

Conread position: 44-307
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 87, 153

Conread position: 44-372
Cow position:
Alignm length: 332
Alignm identity: 224
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 31, 107

Conread position: 63-257
Cow position:
Alignm length: 198
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 69-326
Cow position:
Alignm length: 259
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 0

Conread position: 81-360
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 228, 27

Conread position: 84-259
Cow position:
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 86-297
Cow position:
Alignm length: 212
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 86-334
Cow position:
Alignm length: 249
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 91-334
Cow position:
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 10

Conread position: 95-403
Cow position:
Alignm length: 315
Alignm identity: 217
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 199

Conread position: 101-413
Cow position:
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 33

Conread position: 101-413
Cow position:
Alignm length: 328
Alignm identity: 232
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 34

Conread position: 121-302
Cow position:
Alignm length: 184
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 99, 51

Conread position: 133-326
Cow position:
Alignm length: 195
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 133-509
Cow position:
Alignm length: 388
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 136-343
Cow position:
Alignm length: 209
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 141-425
Cow position:
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 189

Conread position: 151-272
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 153-326
Cow position:
Alignm length: 175
Alignm identity: 142
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 156, 0

Conread position: 159-377
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 150, 127

Conread position: 164-326
Cow position:
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 145, 0

Conread position: 165-324
Cow position:
Alignm length: 162
Alignm identity: 132
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 166-413
Cow position:
Alignm length: 257
Alignm identity: 171
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 152, 78

Conread position: 176-315
Cow position:
Alignm length: 140
Alignm identity: 114
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 179-326
Cow position:
Alignm length: 149
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 130, 0

Conread position: 203-410
Cow position:
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 106, 0

Conread position: 251-425
Cow position:
Alignm length: 177
Alignm identity: 134
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 58, 166

Conread position: 293-496
Cow position:
Alignm length: 209
Alignm identity: 154
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 562-723
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 566-731
Cow position:
Alignm length: 169
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 117

Conread position: 599-735
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 599-736
Cow position:
Alignm length: 138
Alignm identity: 115
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 602-736
Cow position:
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 608-732
Cow position:
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 0

Show alignments to all cow chromosomes.