Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032H19.3 |
| Conread position: | 1-98 |
| Cow position: | chr12:16821928-16822026 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-98 |
| Cow position: | chr12:21942192-21942290 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-98 |
| Cow position: | chr12:36367289-36367387 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-117 |
| Cow position: | chr12:20997637-20997520 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:4157830-4157993 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:8197669-8197832 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:14662172-14662014 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:32653996-32654159 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-157 |
| Cow position: | chr12:35314198-35314033 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 2-149 |
| Cow position: | chr12:11098701-11098851 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 2-149 |
| Cow position: | chr12:25100601-25100442 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-151 |
| Cow position: | chr12:22205287-22205125 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 134-452 |
| Cow position: | chr12:11580543-11580880 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 139-486 |
| Cow position: | chr12:14661830-14661473 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 139-503 |
| Cow position: | chr12:25554577-25554190 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 139-613 |
| Cow position: | chr12:20997297-20996801 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 139-631 |
| Cow position: | chr12:25262668-25262166 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 146-611 |
| Cow position: | chr12:32654343-32654827 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 152-401 |
| Cow position: | chr12:35313862-35313610 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 152-557 |
| Cow position: | chr12:36337601-36337998 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 152-584 |
| Cow position: | chr12:36367646-36368076 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 152-611 |
| Cow position: | chr12:11099046-11099502 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 182 |
| Conread position: | 152-618 |
| Cow position: | chr12:8677288-8676813 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 152-619 |
| Cow position: | chr12:6405832-6405354 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 225 |
| Conread position: | 153-453 |
| Cow position: | chr12:41380492-41380800 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-611 |
| Cow position: | chr12:3361738-3362220 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 411 |
| Conread position: | 153-611 |
| Cow position: | chr12:21387431-21386963 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-613 |
| Cow position: | chr12:27932094-27931622 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 390 |
| Conread position: | 153-637 |
| Cow position: | chr12:1403305-1403796 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 207 |
| Conread position: | 154-638 |
| Cow position: | chr12:21942551-21943045 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 155-611 |
| Cow position: | chr12:21209467-21209942 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 155-611 |
| Cow position: | chr12:43030573-43030102 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 150 |
| Conread position: | 158-468 |
| Cow position: | chr12:20879790-20880092 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 158-620 |
| Cow position: | chr12:37559808-37560297 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 10, 216 |
| Conread position: | 166-622 |
| Cow position: | chr12:21428685-21429149 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 179-611 |
| Cow position: | chr12:17979576-17979998 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 21, 168 |
| Conread position: | 185-468 |
| Cow position: | chr12:5369663-5369946 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 185-489 |
| Cow position: | chr12:22204893-22204585 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 168 |
| Conread position: | 185-557 |
| Cow position: | chr12:36449426-36449787 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 185-608 |
| Cow position: | chr12:28004786-28005181 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 136, 61 |
| Conread position: | 185-611 |
| Cow position: | chr12:21128004-21128403 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 185-613 |
| Cow position: | chr12:21198811-21199271 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 177 |
| Conread position: | 185-613 |
| Cow position: | chr12:42858686-42858255 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 185-655 |
| Cow position: | chr12:27855115-27854641 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 169 |
| Conread position: | 190-442 |
| Cow position: | chr12:349217-349470 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 191-356 |
| Cow position: | chr12:1777447-1777274 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 107, 91 |
| Conread position: | 193-525 |
| Cow position: | chr12:12292830-12293151 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 198-611 |
| Cow position: | chr12:35345422-35345830 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 201-678 |
| Cow position: | chr12:32063971-32064436 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 233-622 |
| Cow position: | chr12:23141298-23140902 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 238-438 |
| Cow position: | chr12:32678033-32677833 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 93, 125 |
| Conread position: | 238-635 |
| Cow position: | chr12:3208859-3209256 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 250-620 |
| Cow position: | chr12:23162013-23161644 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 103 |
| Conread position: | 263-618 |
| Cow position: | chr12:25100146-25099786 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 269-613 |
| Cow position: | chr12:41465556-41465214 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 100 |
| Conread position: | 272-574 |
| Cow position: | chr12:14694952-14695258 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 321-611 |
| Cow position: | chr12:21253623-21253333 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 325-656 |
| Cow position: | chr12:24977825-24977494 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 339-613 |
| Cow position: | chr12:1776957-1776685 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 351-658 |
| Cow position: | chr12:48471859-48471557 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 363-628 |
| Cow position: | chr12:33119181-33119462 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 71, 163 |
| Conread position: | 367-605 |
| Cow position: | chr12:1870339-1870579 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 379-610 |
| Cow position: | chr12:11580859-11581092 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 386-619 |
| Cow position: | chr12:35313340-35313110 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 417-611 |
| Cow position: | chr12:31202406-31202209 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 420-611 |
| Cow position: | chr12:22570737-22570549 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 113 |
Show alignments to all cow chromosomes.