Cow genome map

Conread name: Ss1.1-Pig4-TMW8032H19.3

Conread position: 1-135
Cow position: chr13:30656743-30656596 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-149
Cow position: chr13:31612070-31611908 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-150
Cow position: chr13:13324981-13325143 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr13:34868981-34869142 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 18

Conread position: 1-151
Cow position: chr13:35030776-35030935 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr13:47229769-47229606 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr13:49973916-49974079 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 1-151
Cow position: chr13:58118676-58118513 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-159
Cow position: chr13:34325323-34325152 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 1-159
Cow position: chr13:60466568-60466736 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 76

Conread position: 1-160
Cow position: chr13:6667881-6667709 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-201
Cow position: chr13:30238483-30238698 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 198

Conread position: 2-116
Cow position: chr13:26844325-26844441 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 2-139
Cow position: chr13:15520272-15520122 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr13:3654081-3653925 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 2-149
Cow position: chr13:34042129-34041974 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 2-165
Cow position: chr13:18331647-18331821 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 160

Conread position: 2-169
Cow position: chr13:33336188-33336011 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 172

Conread position: 2-206
Cow position: chr13:13900105-13900320 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 92, 160

Conread position: 2-206
Cow position: chr13:32545616-32545832 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 164

Conread position: 3-151
Cow position: chr13:3057876-3057715 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 134-448
Cow position: chr13:20541469-20541155 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 138-611
Cow position: chr13:6667554-6667071 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 14

Conread position: 138-611
Cow position: chr13:21696827-21697313 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 222

Conread position: 139-619
Cow position: chr13:57024278-57024758 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 13

Conread position: 142-620
Cow position: chr13:12633150-12633620 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 328
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 113

Conread position: 144-451
Cow position: chr13:28670678-28670365 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 8

Conread position: 148-459
Cow position: chr13:60700064-60699752 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 8

Conread position: 151-616
Cow position: chr13:14178247-14177776 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 152-315
Cow position: chr13:34910274-34910108 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 128

Conread position: 152-319
Cow position: chr13:38669972-38670143 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 7

Conread position: 152-558
Cow position: chr13:32737232-32736821 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-585
Cow position: chr13:16254792-16254355 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 203

Conread position: 152-611
Cow position: chr13:13900460-13900926 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 207

Conread position: 152-611
Cow position: chr13:17331171-17330712 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 102

Conread position: 152-611
Cow position: chr13:32545972-32546451 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 399

Conread position: 152-613
Cow position: chr13:1592560-1592097 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 205

Conread position: 152-613
Cow position: chr13:9045369-9045829 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 152-613
Cow position: chr13:34041742-34041275 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 143

Conread position: 152-613
Cow position: chr13:35757864-35758345 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 398

Conread position: 152-619
Cow position: chr13:4484389-4484858 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 152-619
Cow position: chr13:6758562-6759057 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 96

Conread position: 152-619
Cow position: chr13:30303875-30304363 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-619
Cow position: chr13:30654789-30654327 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 209

Conread position: 152-619
Cow position: chr13:31730283-31729826 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 163

Conread position: 152-619
Cow position: chr13:34938057-34938511 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 206

Conread position: 152-634
Cow position: chr13:31611715-31611230 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-638
Cow position: chr13:15923788-15923297 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 153-313
Cow position: chr13:30238831-30238995 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 94

Conread position: 153-352
Cow position: chr13:33335723-33335511 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 153-442
Cow position: chr13:3056543-3056245 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 202

Conread position: 153-470
Cow position: chr13:52646283-52645956 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-503
Cow position: chr13:34424354-34424714 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 230

Conread position: 153-564
Cow position: chr13:60466921-60467337 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 18

Conread position: 153-570
Cow position: chr13:30278212-30278630 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 281
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 15, 107

Conread position: 153-611
Cow position: chr13:17309065-17309530 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-619
Cow position: chr13:11798118-11797654 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 154-620
Cow position: chr13:5625412-5624917 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 406

Conread position: 155-318
Cow position: chr13:30244086-30243918 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 127

Conread position: 155-319
Cow position: chr13:677612-677781 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 155-610
Cow position: chr13:21839605-21839135 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 201

Conread position: 155-611
Cow position: chr13:2388220-2387747 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 226

Conread position: 155-611
Cow position: chr13:47229410-47228939 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 223

Conread position: 156-619
Cow position: chr13:56832676-56833145 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 299
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 58

Conread position: 158-611
Cow position: chr13:50110049-50110511 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 135

Conread position: 160-608
Cow position: chr13:32984749-32984285 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 5

Conread position: 165-611
Cow position: chr13:5628202-5627776 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 298
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 66

Conread position: 165-611
Cow position: chr13:44653207-44652756 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 292
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 23, 217

Conread position: 166-596
Cow position: chr13:42218318-42217866 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 200

Conread position: 166-611
Cow position: chr13:49974283-49974725 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 188

Conread position: 166-627
Cow position: chr13:34324953-34324478 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 208

Conread position: 167-491
Cow position: chr13:26844636-26844951 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 128

Conread position: 167-611
Cow position: chr13:25692292-25692737 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 125

Conread position: 167-619
Cow position: chr13:15450518-15450055 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 259

Conread position: 168-611
Cow position: chr13:8797178-8796745 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 290
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 20, 33

Conread position: 171-353
Cow position: chr13:35031739-35031926 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 9, 179

Conread position: 171-528
Cow position: chr13:34154149-34153780 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 188

Conread position: 184-619
Cow position: chr13:34049368-34049810 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 288
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 135, 14

Conread position: 185-387
Cow position: chr13:34030042-34030245 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 134, 37

Conread position: 185-486
Cow position: chr13:34765823-34765524 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 131, 93

Conread position: 185-611
Cow position: chr13:43982466-43982046 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 16

Conread position: 185-619
Cow position: chr13:15543172-15543610 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 18

Conread position: 185-638
Cow position: chr13:3653689-3653231 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 169

Conread position: 185-670
Cow position: chr13:15519876-15519400 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 188

Conread position: 196-657
Cow position: chr13:4942027-4942489 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 39

Conread position: 199-315
Cow position: chr13:23002651-23002537 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 205-638
Cow position: chr13:31733239-31732803 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 144

Conread position: 228-613
Cow position: chr13:14402424-14402034 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 127

Conread position: 229-619
Cow position: chr13:43590006-43590399 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 125

Conread position: 254-611
Cow position: chr13:13325620-13325989 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 123

Conread position: 259-436
Cow position: chr13:47861532-47861710 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 31, 8

Conread position: 260-611
Cow position: chr13:31556037-31555679 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 105, 66

Conread position: 339-611
Cow position: chr13:678539-678810 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 33

Conread position: 362-619
Cow position: chr13:30239132-30239384 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 139, 92

Conread position: 366-619
Cow position: chr13:48358457-48358710 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 69, 82

Conread position: 404-613
Cow position: chr13:34030472-34030681 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 104

Conread position: 417-611
Cow position: chr13:17998421-17998618 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 28

Conread position: 421-611
Cow position: chr13:28860031-28860224 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 121

Show alignments to all cow chromosomes.