Cow genome map

Conread name: Ss1.1-Pig4-TMW8032H19.3

Conread position: 1-151
Cow position: chr17:2262443-2262606 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr17:11376444-11376281 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr17:15436131-15436294 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-159
Cow position: chr17:20183770-20183934 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 1-159
Cow position: chr17:31767699-31767528 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-165
Cow position: chr17:24782505-24782675 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 159

Conread position: 1-203
Cow position: chr17:14216692-14216480 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 19

Conread position: 1-204
Cow position: chr17:20665385-20665170 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 165

Conread position: 1-206
Cow position: chr17:151532-151317 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 169

Conread position: 2-139
Cow position: chr17:15850745-15850895 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-148
Cow position: chr17:11087379-11087223 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr17:6260190-6260350 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr17:18103342-18103187 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 2-169
Cow position: chr17:6068902-6069077 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 170

Conread position: 2-206
Cow position: chr17:227967-227751 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 164

Conread position: 3-151
Cow position: chr17:43988842-43989003 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 92-637
Cow position: chr17:16899670-16899118 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 371
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 34

Conread position: 102-611
Cow position: chr17:24029358-24028832 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 107-415
Cow position: chr17:38874281-38874599 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 30, 22

Conread position: 129-612
Cow position: chr17:250838-251311 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 10

Conread position: 139-318
Cow position: chr17:11025829-11025647 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 13

Conread position: 151-589
Cow position: chr17:31532922-31533345 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 285, 160

Conread position: 152-325
Cow position: chr17:18102990-18102818 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 150

Conread position: 152-431
Cow position: chr17:3642135-3641850 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 204

Conread position: 152-571
Cow position: chr17:14894858-14895294 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 152-608
Cow position: chr17:11087025-11086564 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 209

Conread position: 152-611
Cow position: chr17:2580319-2580789 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 391

Conread position: 152-611
Cow position: chr17:5227315-5227790 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 330
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 57

Conread position: 152-611
Cow position: chr17:6069251-6069714 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 221

Conread position: 152-611
Cow position: chr17:15324526-15324994 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 221

Conread position: 152-611
Cow position: chr17:20099780-20099302 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 224

Conread position: 152-613
Cow position: chr17:4060796-4061265 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 206

Conread position: 152-613
Cow position: chr17:15851389-15851856 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 152-613
Cow position: chr17:19268132-19267659 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-613
Cow position: chr17:20087053-20086599 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 137

Conread position: 152-613
Cow position: chr17:40805506-40805972 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-619
Cow position: chr17:54757-54272 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 148

Conread position: 152-619
Cow position: chr17:151201-150711 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 220

Conread position: 152-619
Cow position: chr17:6260554-6261033 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 207

Conread position: 152-619
Cow position: chr17:14240195-14240673 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-619
Cow position: chr17:16856821-16856345 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 204

Conread position: 152-620
Cow position: chr17:1657155-1656677 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 205

Conread position: 152-620
Cow position: chr17:19020269-19020751 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 205

Conread position: 153-527
Cow position: chr17:13990652-13990270 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 262
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 140

Conread position: 153-564
Cow position: chr17:1880796-1881216 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 111

Conread position: 153-611
Cow position: chr17:2262802-2263273 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 253

Conread position: 153-611
Cow position: chr17:11783541-11784019 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 86

Conread position: 153-611
Cow position: chr17:14216335-14215862 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 138

Conread position: 153-611
Cow position: chr17:31767343-31766872 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-614
Cow position: chr17:3655596-3655126 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 86

Conread position: 153-637
Cow position: chr17:4942032-4941522 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 345
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 20, 140

Conread position: 154-619
Cow position: chr17:1787240-1786784 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 209

Conread position: 155-408
Cow position: chr17:8209808-8210073 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 203

Conread position: 155-611
Cow position: chr17:15142657-15142190 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 310

Conread position: 155-611
Cow position: chr17:23323753-23323287 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 225

Conread position: 155-611
Cow position: chr17:24782858-24783327 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 66

Conread position: 155-611
Cow position: chr17:34156818-34157285 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 201

Conread position: 155-617
Cow position: chr17:43989197-43989672 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 207

Conread position: 155-618
Cow position: chr17:8202671-8203123 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 322
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 60

Conread position: 155-619
Cow position: chr17:14040337-14039872 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 73

Conread position: 158-357
Cow position: chr17:15156266-15156059 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 127

Conread position: 158-611
Cow position: chr17:15436495-15436947 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 200

Conread position: 166-612
Cow position: chr17:6120424-6120882 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 206

Conread position: 167-618
Cow position: chr17:20081153-20080699 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 39

Conread position: 167-619
Cow position: chr17:2030835-2031287 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 196

Conread position: 175-503
Cow position: chr17:20488659-20488999 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 187

Conread position: 185-399
Cow position: chr17:42265702-42265912 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 132, 72

Conread position: 185-592
Cow position: chr17:239079-239474 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 172

Conread position: 185-611
Cow position: chr17:6611753-6611322 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 164

Conread position: 185-611
Cow position: chr17:16121790-16121395 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 48

Conread position: 185-611
Cow position: chr17:18194545-18194972 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 167

Conread position: 185-613
Cow position: chr17:15371961-15372388 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 183

Conread position: 185-618
Cow position: chr17:20403158-20403601 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 27

Conread position: 186-485
Cow position: chr17:13705280-13705585 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 89, 169

Conread position: 186-586
Cow position: chr17:1703955-1703555 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 26

Conread position: 189-620
Cow position: chr17:36632-37065 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 289
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 139, 165

Conread position: 189-620
Cow position: chr17:3708044-3707608 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 190-613
Cow position: chr17:22558727-22559137 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 52

Conread position: 191-591
Cow position: chr17:4082770-4083168 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 24

Conread position: 201-436
Cow position: chr17:2092050-2091815 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 102

Conread position: 230-611
Cow position: chr17:22132983-22133364 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 246-611
Cow position: chr17:2174608-2174968 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 81

Conread position: 265-611
Cow position: chr17:21418398-21418738 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 9

Conread position: 276-611
Cow position: chr17:9080600-9080256 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 97

Conread position: 301-611
Cow position: chr17:4784000-4783688 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 133, 74

Conread position: 308-619
Cow position: chr17:2078141-2077823 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 56

Conread position: 324-611
Cow position: chr17:20390208-20389921 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 39

Conread position: 378-619
Cow position: chr17:42266347-42266590 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 26

Conread position: 409-608
Cow position: chr17:33284873-33284671 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 39

Conread position: 417-616
Cow position: chr17:13675321-13675114 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 426-611
Cow position: chr17:27793800-27793613 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 23

Show alignments to all cow chromosomes.