Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032H19.3 |
| Conread position: | 1-98 |
| Cow position: | chr19:40887189-40887092 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 1-149 |
| Cow position: | chr19:28581102-28580945 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-151 |
| Cow position: | chr19:39668951-39668796 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 1-159 |
| Cow position: | chr19:43144265-43144436 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-162 |
| Cow position: | chr19:52151278-52151105 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 1-176 |
| Cow position: | chr19:28406150-28405966 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 1-206 |
| Cow position: | chr19:12773670-12773887 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 2-139 |
| Cow position: | chr19:7488871-7489018 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr19:5729389-5729549 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr19:33873984-33874139 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr19:40851880-40851720 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 4-151 |
| Cow position: | chr19:27051954-27051799 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 97-611 |
| Cow position: | chr19:28580805-28580283 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 133-407 |
| Cow position: | chr19:347435-347155 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 135-602 |
| Cow position: | chr19:5028177-5027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 138-619 |
| Cow position: | chr19:135895-135404 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 143-616 |
| Cow position: | chr19:27036684-27036226 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 152-475 |
| Cow position: | chr19:33942515-33942853 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 224 |
| Conread position: | 152-560 |
| Cow position: | chr19:2273472-2273057 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 213 |
| Conread position: | 152-611 |
| Cow position: | chr19:4386534-4386998 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 204 |
| Conread position: | 152-613 |
| Cow position: | chr19:7489255-7489732 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 403 |
| Conread position: | 152-613 |
| Cow position: | chr19:39391419-39391890 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 152-616 |
| Cow position: | chr19:11522255-11521795 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 152-619 |
| Cow position: | chr19:162230-161746 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 152-619 |
| Cow position: | chr19:1588303-1587856 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 152-619 |
| Cow position: | chr19:3138841-3139316 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 152-619 |
| Cow position: | chr19:40851539-40851074 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 132 |
| Conread position: | 152-620 |
| Cow position: | chr19:28405797-28405317 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 250 |
| Conread position: | 152-634 |
| Cow position: | chr19:438528-438038 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 208 |
| Conread position: | 153-611 |
| Cow position: | chr19:32193925-32194405 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 411 |
| Conread position: | 154-355 |
| Cow position: | chr19:40886831-40886621 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 154-611 |
| Cow position: | chr19:43144622-43145092 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 204 |
| Conread position: | 154-613 |
| Cow position: | chr19:33874338-33874807 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 205 |
| Conread position: | 155-353 |
| Cow position: | chr19:52150920-52150712 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 155-611 |
| Cow position: | chr19:7342980-7343447 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 200 |
| Conread position: | 155-611 |
| Cow position: | chr19:28594464-28594918 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 200 |
| Conread position: | 155-619 |
| Cow position: | chr19:39209-39685 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 161-602 |
| Cow position: | chr19:50723477-50723921 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 166-608 |
| Cow position: | chr19:5652793-5652355 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 166-610 |
| Cow position: | chr19:20105650-20106106 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 188 |
| Conread position: | 166-611 |
| Cow position: | chr19:773523-773979 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 210 |
| Conread position: | 166-638 |
| Cow position: | chr19:5900577-5900106 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 188 |
| Conread position: | 171-343 |
| Cow position: | chr19:39667810-39667636 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 173-612 |
| Cow position: | chr19:167638-167178 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 220 |
| Conread position: | 184-611 |
| Cow position: | chr19:35384661-35384237 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 184-624 |
| Cow position: | chr19:32182130-32181692 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 135, 11 |
| Conread position: | 185-486 |
| Cow position: | chr19:204930-205239 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 182 |
| Conread position: | 185-527 |
| Cow position: | chr19:342168-342536 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 185-611 |
| Cow position: | chr19:3113205-3113618 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 107, 46 |
| Conread position: | 185-611 |
| Cow position: | chr19:9707185-9706780 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 185-612 |
| Cow position: | chr19:5729822-5730240 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 166 |
| Conread position: | 185-618 |
| Cow position: | chr19:12774067-12774488 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 24 |
| Conread position: | 185-618 |
| Cow position: | chr19:39184589-39184157 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 185-634 |
| Cow position: | chr19:173182-173655 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 373 |
| Conread position: | 190-314 |
| Cow position: | chr19:1490072-1489951 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 190-422 |
| Cow position: | chr19:35379544-35379770 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 190-619 |
| Cow position: | chr19:39096108-39096526 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 196-614 |
| Cow position: | chr19:2703072-2702656 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 198-619 |
| Cow position: | chr19:36732049-36732472 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 121, 94 |
| Conread position: | 204-544 |
| Cow position: | chr19:75300-74952 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 172 |
| Conread position: | 208-523 |
| Cow position: | chr19:28366987-28367300 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 112, 155 |
| Conread position: | 215-613 |
| Cow position: | chr19:48861225-48860830 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 104, 132 |
| Conread position: | 224-612 |
| Cow position: | chr19:25924315-25924706 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 129 |
| Conread position: | 232-570 |
| Cow position: | chr19:32220624-32220271 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 234-613 |
| Cow position: | chr19:892626-892244 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 119 |
| Conread position: | 252-638 |
| Cow position: | chr19:30756228-30756625 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 267-613 |
| Cow position: | chr19:6713678-6713348 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 155, 61 |
| Conread position: | 271-529 |
| Cow position: | chr19:1656465-1656725 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 287-613 |
| Cow position: | chr19:256306-256644 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 256 |
| Conread position: | 296-613 |
| Cow position: | chr19:32204352-32204670 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 324-611 |
| Cow position: | chr19:33527204-33527491 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 23 |
| Conread position: | 325-619 |
| Cow position: | chr19:40816424-40816125 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 211 |
| Conread position: | 348-611 |
| Cow position: | chr19:52150571-52150306 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 351-578 |
| Cow position: | chr19:24294227-24294452 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 362-620 |
| Cow position: | chr19:1489871-1489612 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 378-613 |
| Cow position: | chr19:39667387-39667153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 157 |
Show alignments to all cow chromosomes.