Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032H19.3 |
| Conread position: | 1-92 |
| Cow position: | chr20:24616345-24616253 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-149 |
| Cow position: | chr20:42905719-42905876 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 1-151 |
| Cow position: | chr20:27869716-27869879 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr20:38351185-38351348 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-206 |
| Cow position: | chr20:29949015-29949232 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 181 |
| Conread position: | 2-117 |
| Cow position: | chr20:20931059-20931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-149 |
| Cow position: | chr20:15292521-15292678 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr20:21914844-21914992 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr20:23799401-23799561 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr20:25850475-25850320 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-149 |
| Cow position: | chr20:28161285-28161442 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-151 |
| Cow position: | chr20:16179299-16179138 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 2-206 |
| Cow position: | chr20:12569035-12569251 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 175 |
| Conread position: | 4-154 |
| Cow position: | chr20:13679523-13679361 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 102-658 |
| Cow position: | chr20:19355582-19356154 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 263 |
| Conread position: | 143-439 |
| Cow position: | chr20:1742719-1743020 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 152-285 |
| Cow position: | chr20:37442427-37442290 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 152-400 |
| Cow position: | chr20:17661204-17660953 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 152-476 |
| Cow position: | chr20:13433730-13433400 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 152-494 |
| Cow position: | chr20:10101833-10101478 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 308 |
| Conread position: | 152-529 |
| Cow position: | chr20:12437837-12437456 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 152-574 |
| Cow position: | chr20:10854488-10854040 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 152-610 |
| Cow position: | chr20:13763777-13764235 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 206 |
| Conread position: | 152-611 |
| Cow position: | chr20:23468793-23468323 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 208 |
| Conread position: | 152-611 |
| Cow position: | chr20:28564720-28564246 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 158 |
| Conread position: | 152-613 |
| Cow position: | chr20:35125365-35125835 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 152-618 |
| Cow position: | chr20:5535804-5536281 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 206 |
| Conread position: | 152-619 |
| Cow position: | chr20:8216384-8216856 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 208 |
| Conread position: | 152-619 |
| Cow position: | chr20:12569390-12569870 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 152-620 |
| Cow position: | chr20:5465918-5466380 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 152-634 |
| Cow position: | chr20:27870073-27870565 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 207 |
| Conread position: | 153-486 |
| Cow position: | chr20:38351544-38351885 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-575 |
| Cow position: | chr20:18314478-18314046 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 153-619 |
| Cow position: | chr20:24615998-24615545 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 279 |
| Conread position: | 155-401 |
| Cow position: | chr20:16105667-16105412 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 198 |
| Conread position: | 155-611 |
| Cow position: | chr20:823632-824110 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 155-611 |
| Cow position: | chr20:19438788-19439254 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 200 |
| Conread position: | 158-411 |
| Cow position: | chr20:31498221-31497961 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 209 |
| Conread position: | 166-611 |
| Cow position: | chr20:8973934-8973480 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 189 |
| Conread position: | 173-544 |
| Cow position: | chr20:32215934-32216288 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 303, 16 |
| Conread position: | 173-620 |
| Cow position: | chr20:19884383-19884816 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 179-616 |
| Cow position: | chr20:21394829-21395264 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 273 |
| Conread position: | 185-319 |
| Cow position: | chr20:21915228-21915361 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 185-607 |
| Cow position: | chr20:5791267-5791668 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 37 |
| Conread position: | 185-607 |
| Cow position: | chr20:25849919-25849486 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 185-611 |
| Cow position: | chr20:14870041-14869618 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 88 |
| Conread position: | 185-618 |
| Cow position: | chr20:15292911-15293335 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 153 |
| Conread position: | 185-619 |
| Cow position: | chr20:13679139-13678699 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 185-619 |
| Cow position: | chr20:15066387-15066816 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 76 |
| Conread position: | 185-619 |
| Cow position: | chr20:23799792-23800231 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 169 |
| Conread position: | 185-637 |
| Cow position: | chr20:15096972-15096535 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 168 |
| Conread position: | 185-658 |
| Cow position: | chr20:872058-871622 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 329 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 385, 51 |
| Conread position: | 185-671 |
| Cow position: | chr20:28161728-28162210 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 183 |
| Conread position: | 186-491 |
| Cow position: | chr20:7083498-7083193 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 107, 68 |
| Conread position: | 186-611 |
| Cow position: | chr20:32349178-32349606 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 187-611 |
| Cow position: | chr20:29949414-29949856 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 362 |
| Conread position: | 190-618 |
| Cow position: | chr20:35105691-35106132 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 198-671 |
| Cow position: | chr20:37581139-37581612 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 113, 79 |
| Conread position: | 200-611 |
| Cow position: | chr20:5229583-5229174 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 245-613 |
| Cow position: | chr20:30686539-30686914 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 271-619 |
| Cow position: | chr20:13664051-13663703 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 272-619 |
| Cow position: | chr20:16178767-16178419 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 278-611 |
| Cow position: | chr20:9343971-9344308 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 325-619 |
| Cow position: | chr20:27338262-27338546 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 334-618 |
| Cow position: | chr20:9521076-9520791 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 334-619 |
| Cow position: | chr20:22210114-22210386 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 175, 26 |
| Conread position: | 343-619 |
| Cow position: | chr20:21915700-21915979 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 399-611 |
| Cow position: | chr20:30429395-30429609 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 405-619 |
| Cow position: | chr20:17660615-17660395 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 421-611 |
| Cow position: | chr20:40259446-40259639 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 24 |
Show alignments to all cow chromosomes.