Cow genome map

Conread name: Ss1.1-Pig4-TMW8032H19.3

Conread position: 1-117
Cow position: chr21:2416842-2416964 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-117
Cow position: chr21:7266897-7266781 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 55, 94

Conread position: 1-149
Cow position: chr21:35144391-35144549 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr21:11406368-11406205 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr21:37046248-37046411 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr21:37371873-37372036 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr21:39425689-39425852 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 1-159
Cow position: chr21:12055373-12055202 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-179
Cow position: chr21:2475913-2475723 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 176

Conread position: 1-206
Cow position: chr21:47941484-47941701 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 165

Conread position: 2-149
Cow position: chr21:146558-146715 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr21:31559024-31558869 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 2-151
Cow position: chr21:1287591-1287429 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-151
Cow position: chr21:2883111-2882949 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-151
Cow position: chr21:11453029-11452867 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-151
Cow position: chr21:23812807-23812968 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-156
Cow position: chr21:30599292-30599129 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 157

Conread position: 2-206
Cow position: chr21:10850712-10850923 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 156

Conread position: 125-619
Cow position: chr21:35144715-35145219 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 27

Conread position: 134-619
Cow position: chr21:4184871-4185380 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 15

Conread position: 139-611
Cow position: chr21:18817582-18817097 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 143-309
Cow position: chr21:4077808-4077980 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 151-491
Cow position: chr21:10567659-10568003 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 15, 39

Conread position: 151-619
Cow position: chr21:2711949-2712384 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 152-315
Cow position: chr21:27566627-27566791 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 152-315
Cow position: chr21:28613089-28613247 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 152-395
Cow position: chr21:6624756-6625007 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 112

Conread position: 152-430
Cow position: chr21:37719036-37718756 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 14, 183

Conread position: 152-475
Cow position: chr21:5018097-5018431 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 152-485
Cow position: chr21:25782624-25782963 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 199

Conread position: 152-587
Cow position: chr21:2882754-2882317 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 207

Conread position: 152-592
Cow position: chr21:1287234-1286769 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 320

Conread position: 152-608
Cow position: chr21:26402504-26402039 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-609
Cow position: chr21:2417199-2417664 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 329

Conread position: 152-611
Cow position: chr21:30065-30520 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 152-611
Cow position: chr21:9892875-9893341 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 228

Conread position: 152-611
Cow position: chr21:33253160-33253633 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 135

Conread position: 152-613
Cow position: chr21:1192744-1193209 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 152-613
Cow position: chr21:3779752-3780224 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 206

Conread position: 152-613
Cow position: chr21:10851064-10851538 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 379

Conread position: 152-619
Cow position: chr21:146913-147386 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 209

Conread position: 152-619
Cow position: chr21:2540089-2539643 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 324
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 12

Conread position: 152-619
Cow position: chr21:5840280-5839803 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 153-326
Cow position: chr21:11452672-11452492 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 153-367
Cow position: chr21:21222983-21222759 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 119

Conread position: 153-468
Cow position: chr21:37046607-37046930 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 15, 106

Conread position: 153-494
Cow position: chr21:37935809-37936160 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-528
Cow position: chr21:23297830-23297458 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 35

Conread position: 153-611
Cow position: chr21:12055019-12054565 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 140

Conread position: 153-622
Cow position: chr21:39426048-39426525 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 198

Conread position: 153-638
Cow position: chr21:2511826-2512325 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 259

Conread position: 154-410
Cow position: chr21:46916661-46916925 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 14, 201

Conread position: 154-429
Cow position: chr21:13313745-13314024 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 154-619
Cow position: chr21:27069981-27069504 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 336

Conread position: 155-611
Cow position: chr21:34001687-34001226 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 307
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 137

Conread position: 158-611
Cow position: chr21:34823223-34822760 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 196

Conread position: 166-611
Cow position: chr21:11506596-11507064 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 220

Conread position: 166-611
Cow position: chr21:42914364-42914813 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 210

Conread position: 177-638
Cow position: chr21:45782496-45782957 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 177

Conread position: 179-608
Cow position: chr21:28985132-28985555 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 285
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 175

Conread position: 181-571
Cow position: chr21:2673988-2673595 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 168

Conread position: 185-432
Cow position: chr21:49325483-49325730 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 166
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 132, 169

Conread position: 185-433
Cow position: chr21:36547-36306 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 66

Conread position: 185-453
Cow position: chr21:48292472-48292745 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 135, 105

Conread position: 185-589
Cow position: chr21:26835913-26836326 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 155

Conread position: 185-593
Cow position: chr21:1689138-1688720 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 273
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 134, 263

Conread position: 185-608
Cow position: chr21:20743557-20743166 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 110, 97

Conread position: 185-610
Cow position: chr21:360666-361123 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 380

Conread position: 185-613
Cow position: chr21:4588971-4588524 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 106

Conread position: 185-613
Cow position: chr21:31515305-31514862 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 361

Conread position: 185-613
Cow position: chr21:40270649-40270225 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 24

Conread position: 185-619
Cow position: chr21:467891-468316 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 109

Conread position: 185-631
Cow position: chr21:28256456-28256897 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 120

Conread position: 185-658
Cow position: chr21:218074-218519 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 318
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 248, 60

Conread position: 191-638
Cow position: chr21:37372266-37372715 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 156

Conread position: 193-654
Cow position: chr21:39088033-39088480 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 295
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 81

Conread position: 195-609
Cow position: chr21:3169429-3169841 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 276
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 141, 169

Conread position: 196-611
Cow position: chr21:21915717-21916144 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 18

Conread position: 202-619
Cow position: chr21:36979873-36979458 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 276
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 139, 126

Conread position: 204-606
Cow position: chr21:45786391-45785986 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 273
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 30, 16

Conread position: 209-618
Cow position: chr21:30598428-30598021 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 140

Conread position: 209-619
Cow position: chr21:27284499-27284928 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 349

Conread position: 221-458
Cow position: chr21:29625685-29625446 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 98, 128

Conread position: 224-611
Cow position: chr21:27036339-27035947 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 125

Conread position: 226-611
Cow position: chr21:11452482-11452099 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 235
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 102, 126

Conread position: 239-619
Cow position: chr21:47942024-47942407 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 134

Conread position: 260-658
Cow position: chr21:4716119-4716513 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 61, 7

Conread position: 267-638
Cow position: chr21:28736278-28736645 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 257
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 209

Conread position: 269-611
Cow position: chr21:40683339-40682993 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 248
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 83

Conread position: 275-634
Cow position: chr21:47646454-47646803 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 280-582
Cow position: chr21:26849902-26849600 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 16

Conread position: 303-611
Cow position: chr21:7063653-7063954 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 49

Conread position: 366-585
Cow position: chr21:4077989-4078197 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 64

Show alignments to all cow chromosomes.