Cow genome map

Conread name: Ss1.1-Pig4-TMW8032H19.3

Conread position: 1-98
Cow position: chr23:28368065-28367967 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-117
Cow position: chr23:966880-966761 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-138
Cow position: chr23:17785867-17785717 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-139
Cow position: chr23:19490003-19490149 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-139
Cow position: chr23:28913850-28914001 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr23:12887521-12887364 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 10

Conread position: 1-151
Cow position: chr23:16616384-16616221 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr23:23830415-23830578 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-151
Cow position: chr23:31447270-31447433 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-156
Cow position: chr23:36030916-36030752 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 158

Conread position: 1-159
Cow position: chr23:19950132-19949969 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 1-187
Cow position: chr23:28217745-28217945 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 165

Conread position: 1-203
Cow position: chr23:1402035-1401834 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 92

Conread position: 2-117
Cow position: chr23:11778951-11779067 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-139
Cow position: chr23:3880619-3880474 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr23:2716851-2717008 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr23:15177533-15177690 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr23:15219441-15219288 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 108-491
Cow position: chr23:1401759-1401380 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 45

Conread position: 108-618
Cow position: chr23:965729-965212 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 48

Conread position: 135-611
Cow position: chr23:618664-618192 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 139-613
Cow position: chr23:2026279-2025801 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 13

Conread position: 139-613
Cow position: chr23:22146498-22146029 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 13

Conread position: 147-619
Cow position: chr23:25683129-25682671 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 130

Conread position: 150-326
Cow position: chr23:7336935-7337113 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 70

Conread position: 151-586
Cow position: chr23:28025480-28025906 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 17, 91

Conread position: 151-611
Cow position: chr23:3880271-3879805 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 130

Conread position: 151-613
Cow position: chr23:4817832-4818304 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 126

Conread position: 152-319
Cow position: chr23:28914206-28914379 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 152-446
Cow position: chr23:15219091-15218787 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 207

Conread position: 152-486
Cow position: chr23:2717205-2717540 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 49

Conread position: 152-486
Cow position: chr23:16614624-16614283 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 245

Conread position: 152-503
Cow position: chr23:8286842-8287203 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 135

Conread position: 152-557
Cow position: chr23:27971352-27971753 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 287
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 16, 92

Conread position: 152-558
Cow position: chr23:7369347-7369748 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 36, 12

Conread position: 152-586
Cow position: chr23:28078464-28078892 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 293
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 87

Conread position: 152-586
Cow position: chr23:28367710-28367271 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 152-611
Cow position: chr23:36030563-36030104 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 69

Conread position: 152-613
Cow position: chr23:3706932-3707407 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 207

Conread position: 152-613
Cow position: chr23:4639810-4639327 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 205

Conread position: 152-618
Cow position: chr23:2758699-2759176 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 207

Conread position: 152-619
Cow position: chr23:2781157-2780678 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 199

Conread position: 152-619
Cow position: chr23:4889495-4889974 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-619
Cow position: chr23:11779595-11780067 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-620
Cow position: chr23:29402908-29402434 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 202

Conread position: 152-636
Cow position: chr23:20155407-20154915 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 180

Conread position: 153-445
Cow position: chr23:11077396-11077104 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 16, 122

Conread position: 153-486
Cow position: chr23:2312429-2312086 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-596
Cow position: chr23:23171312-23171761 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-619
Cow position: chr23:27400320-27400810 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 401

Conread position: 154-619
Cow position: chr23:16498415-16497953 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 61

Conread position: 155-619
Cow position: chr23:29451526-29451064 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 125

Conread position: 158-611
Cow position: chr23:19949782-19949311 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 224

Conread position: 166-351
Cow position: chr23:28218118-28218307 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 154, 24

Conread position: 167-613
Cow position: chr23:5873751-5873295 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 134

Conread position: 171-613
Cow position: chr23:1012960-1012518 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 301
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 13, 99

Conread position: 176-611
Cow position: chr23:38581566-38581986 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 178

Conread position: 181-530
Cow position: chr23:17186562-17186906 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 250, 147

Conread position: 181-613
Cow position: chr23:6220099-6220532 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 295
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 144, 15

Conread position: 184-613
Cow position: chr23:13510506-13510904 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 281
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 377, 45

Conread position: 185-425
Cow position: chr23:4753945-4754199 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 116

Conread position: 185-527
Cow position: chr23:25534168-25534512 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 227
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 136, 164

Conread position: 185-608
Cow position: chr23:2576276-2576687 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 31

Conread position: 185-613
Cow position: chr23:8299519-8299097 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 278
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 154, 116

Conread position: 185-613
Cow position: chr23:15177923-15178355 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 200

Conread position: 185-619
Cow position: chr23:15526419-15526852 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 169

Conread position: 185-619
Cow position: chr23:19490389-19490831 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 24

Conread position: 185-620
Cow position: chr23:5739505-5739068 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 103

Conread position: 185-620
Cow position: chr23:15876710-15876281 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 304
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 120, 85

Conread position: 185-626
Cow position: chr23:1956753-1957180 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 106

Conread position: 186-424
Cow position: chr23:948939-948708 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 162, 30

Conread position: 190-446
Cow position: chr23:4510913-4511179 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 134, 109

Conread position: 191-397
Cow position: chr23:7045586-7045378 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 133, 163

Conread position: 191-611
Cow position: chr23:13511966-13512384 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 165

Conread position: 191-611
Cow position: chr23:26159871-26159430 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 346

Conread position: 192-596
Cow position: chr23:2341934-2342359 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 161

Conread position: 195-426
Cow position: chr23:19450973-19451204 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 100, 8

Conread position: 196-638
Cow position: chr23:14262716-14263172 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 295
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 70

Conread position: 197-619
Cow position: chr23:14964184-14963766 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 157

Conread position: 211-404
Cow position: chr23:2440979-2440785 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 74

Conread position: 224-613
Cow position: chr23:2794367-2793977 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 129

Conread position: 227-638
Cow position: chr23:1023084-1022655 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 282

Conread position: 271-586
Cow position: chr23:28108614-28108925 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 223
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 49, 63

Conread position: 291-619
Cow position: chr23:21243790-21243459 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 251

Conread position: 324-611
Cow position: chr23:4361017-4361303 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 126, 23

Conread position: 324-611
Cow position: chr23:14923306-14923019 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 111, 23

Conread position: 325-575
Cow position: chr23:22167665-22167910 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 122, 41

Conread position: 325-666
Cow position: chr23:30237262-30237601 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 110, 22

Conread position: 333-611
Cow position: chr23:14972973-14972696 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 102, 33

Conread position: 363-611
Cow position: chr23:28218447-28218700 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 173

Conread position: 409-619
Cow position: chr23:23282304-23282515 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 25

Conread position: 463-619
Cow position: chr23:16054910-16055063 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 16

Show alignments to all cow chromosomes.