Cow genome map

Conread name: Ss1.1-Pig4-TMW8032H19.3

Conread position: 1-98
Cow position: chr28:24668108-24668203 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 1-149
Cow position: chr28:3191750-3191589 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr28:1953629-1953794 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1-151
Cow position: chr28:2724423-2724260 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr28:7822757-7822920 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-151
Cow position: chr28:21359981-21360144 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 1-151
Cow position: chr28:22232900-22232737 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-204
Cow position: chr28:6538762-6538548 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 165

Conread position: 1-204
Cow position: chr28:10617286-10617075 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 55, 158

Conread position: 1-204
Cow position: chr28:24589353-24589568 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 165

Conread position: 2-117
Cow position: chr28:2084099-2084217 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr28:1167375-1167215 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr28:5113791-5113634 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 2-149
Cow position: chr28:5566656-5566816 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr28:5937986-5938146 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-149
Cow position: chr28:17666792-17666640 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-149
Cow position: chr28:26425744-26425584 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-163
Cow position: chr28:14751046-14751220 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 2-206
Cow position: chr28:12150810-12151023 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 54, 172

Conread position: 2-206
Cow position: chr28:12409721-12409508 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 158

Conread position: 3-151
Cow position: chr28:5798252-5798408 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 3-151
Cow position: chr28:10071790-10071940 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 92

Conread position: 4-151
Cow position: chr28:7740988-7741135 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 52, 74

Conread position: 8-149
Cow position: chr28:18519937-18519783 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 125-619
Cow position: chr28:18519618-18519115 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 28

Conread position: 133-492
Cow position: chr28:9268698-9269059 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 241
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 116

Conread position: 139-613
Cow position: chr28:14704541-14704057 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 13

Conread position: 144-613
Cow position: chr28:5765595-5766058 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 340
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 5

Conread position: 151-524
Cow position: chr28:10581230-10580847 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 64

Conread position: 152-305
Cow position: chr28:2085361-2085517 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 63

Conread position: 152-454
Cow position: chr28:3019859-3019537 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 303

Conread position: 152-475
Cow position: chr28:1217295-1216959 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 152-479
Cow position: chr28:15684096-15684442 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 152-491
Cow position: chr28:5113438-5113090 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-564
Cow position: chr28:8379915-8380341 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 230

Conread position: 152-605
Cow position: chr28:10072133-10072598 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 219

Conread position: 152-608
Cow position: chr28:10646541-10646101 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 322
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 66

Conread position: 152-608
Cow position: chr28:22260293-22259826 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 208

Conread position: 152-609
Cow position: chr28:26425397-26424927 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-611
Cow position: chr28:5750841-5750379 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 152-611
Cow position: chr28:8720088-8719632 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 152-611
Cow position: chr28:13460832-13461304 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 302

Conread position: 152-611
Cow position: chr28:24668478-24668937 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 62

Conread position: 152-613
Cow position: chr28:7002854-7003326 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-613
Cow position: chr28:33253162-33253636 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 239

Conread position: 152-618
Cow position: chr28:1167018-1166549 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 108

Conread position: 152-618
Cow position: chr28:29820854-29821330 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-618
Cow position: chr28:32791517-32791047 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 156

Conread position: 152-619
Cow position: chr28:1505728-1506201 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 200

Conread position: 152-620
Cow position: chr28:12409367-12408901 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 58

Conread position: 152-626
Cow position: chr28:5814234-5814698 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 300
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 66

Conread position: 152-626
Cow position: chr28:12151164-12151649 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 108

Conread position: 152-634
Cow position: chr28:5567013-5567485 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 208

Conread position: 152-638
Cow position: chr28:1386533-1386047 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 152-638
Cow position: chr28:5938343-5938838 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 209

Conread position: 153-384
Cow position: chr28:2724064-2723826 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 111

Conread position: 153-574
Cow position: chr28:6538404-6537977 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 91

Conread position: 153-574
Cow position: chr28:14751403-14751831 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 202

Conread position: 153-611
Cow position: chr28:484734-484267 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 73

Conread position: 154-659
Cow position: chr28:7811310-7811799 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 215

Conread position: 155-313
Cow position: chr28:7823402-7823566 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 155-611
Cow position: chr28:9179488-9179941 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 165-619
Cow position: chr28:17666434-17665970 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 194

Conread position: 166-318
Cow position: chr28:6779465-6779308 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 166-431
Cow position: chr28:22064517-22064249 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 17

Conread position: 166-609
Cow position: chr28:24589725-24590179 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 213

Conread position: 167-611
Cow position: chr28:24884103-24883657 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 211

Conread position: 167-613
Cow position: chr28:12180197-12179759 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 280
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 138

Conread position: 167-638
Cow position: chr28:5799171-5799641 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 188

Conread position: 168-509
Cow position: chr28:8684846-8684508 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 156, 78

Conread position: 171-611
Cow position: chr28:21360363-21360820 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 299

Conread position: 171-623
Cow position: chr28:14233060-14232596 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 18, 50

Conread position: 179-475
Cow position: chr28:13603940-13603642 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 71, 200

Conread position: 185-343
Cow position: chr28:22232524-22232360 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 185-524
Cow position: chr28:2988186-2987846 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 178

Conread position: 185-529
Cow position: chr28:29761033-29760683 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 29, 11

Conread position: 185-592
Cow position: chr28:14194628-14194230 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 276
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 251, 46

Conread position: 185-618
Cow position: chr28:3191358-3190920 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 169

Conread position: 185-619
Cow position: chr28:783570-783992 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 138

Conread position: 185-619
Cow position: chr28:7741348-7741777 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 24

Conread position: 185-619
Cow position: chr28:10460706-10460273 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 32

Conread position: 185-684
Cow position: chr28:1813966-1813450 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 168

Conread position: 188-526
Cow position: chr28:6231872-6231529 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 172

Conread position: 190-611
Cow position: chr28:15586994-15587416 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 289
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 120, 67

Conread position: 193-608
Cow position: chr28:33247160-33246755 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 274
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 127, 55

Conread position: 199-658
Cow position: chr28:18146818-18146365 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 112

Conread position: 199-670
Cow position: chr28:5802949-5803424 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 317
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 66, 154

Conread position: 218-637
Cow position: chr28:15035186-15034770 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 222

Conread position: 230-611
Cow position: chr28:1954296-1954684 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 119

Conread position: 238-611
Cow position: chr28:22042325-22041959 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 264
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 81, 117

Conread position: 248-613
Cow position: chr28:10470468-10470835 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 118

Conread position: 251-523
Cow position: chr28:6457360-6457096 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 98

Conread position: 254-611
Cow position: chr28:7788927-7788571 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 97

Conread position: 263-611
Cow position: chr28:10496557-10496204 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 5

Conread position: 268-619
Cow position: chr28:13374257-13373923 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 53, 89

Conread position: 274-562
Cow position: chr28:7027271-7026982 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 47, 78

Conread position: 303-611
Cow position: chr28:7826996-7827314 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 17, 72

Conread position: 340-611
Cow position: chr28:5913407-5913134 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 17

Conread position: 346-609
Cow position: chr28:6778880-6778615 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 20

Conread position: 351-613
Cow position: chr28:21566517-21566785 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 190

Conread position: 360-611
Cow position: chr28:17381787-17381535 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 169

Conread position: 362-626
Cow position: chr28:22232202-22231936 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 73, 145

Conread position: 374-619
Cow position: chr28:25760591-25760838 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 77, 33

Conread position: 405-613
Cow position: chr28:17389520-17389727 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 28, 134

Show alignments to all cow chromosomes.