Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032H19.3 |
| Conread position: | 1-98 |
| Cow position: | chr5:54931937-54931839 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-138 |
| Cow position: | chr5:46660320-46660466 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:241484-241647 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:4089353-4089516 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:4385530-4385689 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:10483130-10483293 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:12643437-12643274 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:14380425-14380587 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 148 |
| Conread position: | 1-151 |
| Cow position: | chr5:23960033-23959870 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:27908990-27908827 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:35300381-35300544 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:41528471-41528313 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:41555326-41555170 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:44459765-44459928 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:45181862-45181699 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:45700602-45700760 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:48467997-48467835 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:59060900-59061059 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-152 |
| Cow position: | chr5:46644965-46645124 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:3964732-3964903 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-98 |
| Cow position: | chr5:32946441-32946538 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-139 |
| Cow position: | chr5:3786215-3786356 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 2-139 |
| Cow position: | chr5:7274115-7274265 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-139 |
| Cow position: | chr5:54792350-54792203 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr5:415433-415273 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr5:1341748-1341588 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-149 |
| Cow position: | chr5:37732635-37732795 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-151 |
| Cow position: | chr5:2531543-2531700 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 134-341 |
| Cow position: | chr5:29766508-29766719 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 134-631 |
| Cow position: | chr5:46668581-46669076 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 18 |
| Conread position: | 134-638 |
| Cow position: | chr5:41961100-41960607 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 143-401 |
| Cow position: | chr5:32308762-32308496 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 23, 161 |
| Conread position: | 145-613 |
| Cow position: | chr5:10919460-10919932 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 201 |
| Conread position: | 146-671 |
| Cow position: | chr5:47893904-47893374 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 352 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 171 |
| Conread position: | 149-609 |
| Cow position: | chr5:34902828-34903288 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 149-611 |
| Cow position: | chr5:32363611-32364052 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 151-613 |
| Cow position: | chr5:46645603-46646052 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 152-319 |
| Cow position: | chr5:35526442-35526610 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 152-347 |
| Cow position: | chr5:49591458-49591253 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 152-356 |
| Cow position: | chr5:49130196-49130404 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 152-427 |
| Cow position: | chr5:39246171-39245889 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 208 |
| Conread position: | 152-486 |
| Cow position: | chr5:32947697-32948047 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 209 |
| Conread position: | 152-492 |
| Cow position: | chr5:28241693-28242040 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 215 |
| Conread position: | 152-579 |
| Cow position: | chr5:13046092-13046531 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 152-605 |
| Cow position: | chr5:51770303-51769856 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 152-611 |
| Cow position: | chr5:2915090-2915560 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 152-611 |
| Cow position: | chr5:37732988-37733459 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 152-611 |
| Cow position: | chr5:48808098-48807628 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 152-612 |
| Cow position: | chr5:3503477-3502997 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 152-613 |
| Cow position: | chr5:34697244-34697714 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 232 |
| Conread position: | 152-613 |
| Cow position: | chr5:55628632-55629104 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 208 |
| Conread position: | 152-613 |
| Cow position: | chr5:59282960-59283429 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 152-618 |
| Cow position: | chr5:64781374-64780898 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 208 |
| Conread position: | 152-619 |
| Cow position: | chr5:1341391-1340915 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 152-619 |
| Cow position: | chr5:4069861-4070339 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 152-619 |
| Cow position: | chr5:24099310-24099784 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 152-619 |
| Cow position: | chr5:28012295-28012790 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 194 |
| Conread position: | 152-619 |
| Cow position: | chr5:41528133-41527677 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 170 |
| Conread position: | 152-619 |
| Cow position: | chr5:73488916-73488441 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 152-638 |
| Cow position: | chr5:6154259-6153766 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 152-638 |
| Cow position: | chr5:30579970-30580477 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 385 |
| Conread position: | 152-638 |
| Cow position: | chr5:31707191-31707699 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 244 |
| Conread position: | 153-310 |
| Cow position: | chr5:44784272-44784110 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 153-319 |
| Cow position: | chr5:241840-242008 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 153-513 |
| Cow position: | chr5:44460124-44460499 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-529 |
| Cow position: | chr5:38073673-38074060 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-569 |
| Cow position: | chr5:45181503-45181076 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 202 |
| Conread position: | 153-611 |
| Cow position: | chr5:23959674-23959219 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 149 |
| Conread position: | 153-611 |
| Cow position: | chr5:26078556-26078082 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 145 |
| Conread position: | 153-611 |
| Cow position: | chr5:35300740-35301209 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 153-611 |
| Cow position: | chr5:59061255-59061748 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 332 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 15, 287 |
| Conread position: | 153-613 |
| Cow position: | chr5:4385884-4386350 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 153-619 |
| Cow position: | chr5:58152125-58151666 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 154-611 |
| Cow position: | chr5:307685-307216 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 201 |
| Conread position: | 154-611 |
| Cow position: | chr5:42505646-42506115 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 202 |
| Conread position: | 154-619 |
| Cow position: | chr5:57481896-57481421 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 206 |
| Conread position: | 155-349 |
| Cow position: | chr5:46776713-46776918 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 155-594 |
| Cow position: | chr5:6588379-6587927 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 233 |
| Conread position: | 155-611 |
| Cow position: | chr5:3965094-3965557 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 155-611 |
| Cow position: | chr5:4018557-4018088 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 155-611 |
| Cow position: | chr5:4757520-4757066 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 202 |
| Conread position: | 155-611 |
| Cow position: | chr5:18121834-18121372 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 155-611 |
| Cow position: | chr5:46807955-46808423 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 200 |
| Conread position: | 155-619 |
| Cow position: | chr5:10775625-10775152 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 158-585 |
| Cow position: | chr5:58196662-58197095 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 197 |
| Conread position: | 158-611 |
| Cow position: | chr5:27908628-27908158 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 224 |
| Conread position: | 158-620 |
| Cow position: | chr5:10842732-10842265 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 198 |
| Conread position: | 159-611 |
| Cow position: | chr5:54791984-54791522 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 382 |
| Conread position: | 166-300 |
| Cow position: | chr5:48467625-48467486 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 166-438 |
| Cow position: | chr5:67594548-67594820 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 166-530 |
| Cow position: | chr5:75624344-75624719 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 22, 220 |
| Conread position: | 166-611 |
| Cow position: | chr5:46664673-46665119 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 166-619 |
| Cow position: | chr5:47830416-47829958 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 200 |
| Conread position: | 167-601 |
| Cow position: | chr5:41956705-41956273 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 167-618 |
| Cow position: | chr5:45700971-45701431 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 168-356 |
| Cow position: | chr5:54861403-54861208 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 175-619 |
| Cow position: | chr5:1227337-1227794 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 10, 187 |
| Conread position: | 184-619 |
| Cow position: | chr5:28950186-28949763 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 185-319 |
| Cow position: | chr5:26067214-26067083 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 185-381 |
| Cow position: | chr5:53703482-53703284 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 154, 143 |
| Conread position: | 185-486 |
| Cow position: | chr5:27002690-27002987 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 185-520 |
| Cow position: | chr5:18115195-18114872 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 136, 72 |
| Conread position: | 185-539 |
| Cow position: | chr5:51313515-51313153 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 185-561 |
| Cow position: | chr5:9419391-9419018 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 185-568 |
| Cow position: | chr5:46737894-46737513 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 97 |
| Conread position: | 185-608 |
| Cow position: | chr5:52613267-52612850 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 170, 81 |
| Conread position: | 185-611 |
| Cow position: | chr5:14784687-14784255 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 141, 65 |
| Conread position: | 185-611 |
| Cow position: | chr5:49519240-49519671 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 169 |
| Conread position: | 185-613 |
| Cow position: | chr5:12643046-12642632 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 129 |
| Conread position: | 185-619 |
| Cow position: | chr5:3786599-3787045 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 301 |
| Conread position: | 185-619 |
| Cow position: | chr5:18273421-18273880 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 85 |
| Conread position: | 185-620 |
| Cow position: | chr5:53625230-53624803 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 185-658 |
| Cow position: | chr5:41554655-41554175 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 185-658 |
| Cow position: | chr5:46005173-46004701 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 186-442 |
| Cow position: | chr5:27055999-27055738 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 135, 254 |
| Conread position: | 186-631 |
| Cow position: | chr5:18401009-18400571 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 187-659 |
| Cow position: | chr5:41465756-41466232 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 8 |
| Conread position: | 188-622 |
| Cow position: | chr5:49757981-49757556 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 245, 84 |
| Conread position: | 190-619 |
| Cow position: | chr5:31100739-31100310 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 338 |
| Conread position: | 190-638 |
| Cow position: | chr5:5103890-5104359 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 321 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 100, 178 |
| Conread position: | 191-611 |
| Cow position: | chr5:18885843-18885423 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 191-626 |
| Cow position: | chr5:46629500-46629057 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 181 |
| Conread position: | 198-596 |
| Cow position: | chr5:40788758-40789164 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 145 |
| Conread position: | 198-619 |
| Cow position: | chr5:23669436-23669011 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 70 |
| Conread position: | 199-484 |
| Cow position: | chr5:48532723-48533001 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 201-613 |
| Cow position: | chr5:10856120-10855704 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 152 |
| Conread position: | 211-638 |
| Cow position: | chr5:14344712-14344298 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 219, 94 |
| Conread position: | 238-574 |
| Cow position: | chr5:24999252-24998920 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 258-627 |
| Cow position: | chr5:39016789-39017151 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 259-612 |
| Cow position: | chr5:51309101-51308751 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 201, 88 |
| Conread position: | 275-633 |
| Cow position: | chr5:27654585-27654938 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 277-611 |
| Cow position: | chr5:12731939-12731599 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 278-671 |
| Cow position: | chr5:24107908-24107514 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 280-612 |
| Cow position: | chr5:7274625-7274955 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 296-619 |
| Cow position: | chr5:23687100-23686774 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 326-613 |
| Cow position: | chr5:24151610-24151886 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 339-611 |
| Cow position: | chr5:26183681-26183950 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 345-491 |
| Cow position: | chr5:32282122-32281975 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 349-613 |
| Cow position: | chr5:27197168-27197430 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 354-611 |
| Cow position: | chr5:988210-987958 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 381-619 |
| Cow position: | chr5:29767007-29767242 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 386-609 |
| Cow position: | chr5:32308224-32308001 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 429-611 |
| Cow position: | chr5:40923711-40923529 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 5 |
Show alignments to all cow chromosomes.