Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-363 |
| Cow position: | chr11:32071486-32071875 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 1-381 |
| Cow position: | chr11:10218182-10217778 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 200 |
| Conread position: | 1-407 |
| Cow position: | chr11:44895635-44895204 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 1-453 |
| Cow position: | chr11:44496210-44495732 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 1-471 |
| Cow position: | chr11:87127215-87127721 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 228 |
| Conread position: | 1-476 |
| Cow position: | chr11:21466454-21466963 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-481 |
| Cow position: | chr11:29234270-29233766 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 1-482 |
| Cow position: | chr11:3492390-3492903 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 1-482 |
| Cow position: | chr11:8887779-8887266 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 196 |
| Conread position: | 1-482 |
| Cow position: | chr11:9158043-9157541 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 1-482 |
| Cow position: | chr11:17220834-17220323 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 348 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 201 |
| Conread position: | 1-482 |
| Cow position: | chr11:28230371-28229861 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 481 |
| Conread position: | 1-482 |
| Cow position: | chr11:37492273-37491753 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 355 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 1-482 |
| Cow position: | chr11:42428707-42429225 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 190 |
| Conread position: | 1-482 |
| Cow position: | chr11:44230510-44231008 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 252 |
| Conread position: | 1-484 |
| Cow position: | chr11:1496689-1496180 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 1-484 |
| Cow position: | chr11:12351692-12351171 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 193 |
| Conread position: | 2-476 |
| Cow position: | chr11:10210587-10210076 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 6-281 |
| Cow position: | chr11:8896029-8896312 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 6-482 |
| Cow position: | chr11:36761471-36761976 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 384 |
| Conread position: | 7-464 |
| Cow position: | chr11:43731803-43732282 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 9-477 |
| Cow position: | chr11:33044737-33044234 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 381 |
| Conread position: | 15-382 |
| Cow position: | chr11:28050396-28050003 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 20-482 |
| Cow position: | chr11:85394414-85393919 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 209 |
| Conread position: | 25-482 |
| Cow position: | chr11:8262285-8261811 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 25-482 |
| Cow position: | chr11:17108284-17107794 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 25-482 |
| Cow position: | chr11:67847165-67846679 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 198 |
| Conread position: | 28-203 |
| Cow position: | chr11:9416274-9416097 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 109 |
| Conread position: | 28-482 |
| Cow position: | chr11:12359017-12358533 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 320 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr11:19103081-19102594 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 28-482 |
| Cow position: | chr11:23876709-23877194 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 319 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 21, 424 |
| Conread position: | 28-482 |
| Cow position: | chr11:24392731-24393209 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr11:26125523-26125039 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr11:28055189-28054708 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 21, 372 |
| Conread position: | 28-482 |
| Cow position: | chr11:29669224-29668739 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 463 |
| Conread position: | 28-482 |
| Cow position: | chr11:37093657-37093169 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-470 |
| Cow position: | chr11:58133780-58134250 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 31-475 |
| Cow position: | chr11:34020316-34020775 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 191 |
| Conread position: | 31-482 |
| Cow position: | chr11:71329052-71329536 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 159 |
| Conread position: | 37-488 |
| Cow position: | chr11:25526996-25527456 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 74-471 |
| Cow position: | chr11:14730053-14729646 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 74-471 |
| Cow position: | chr11:44157769-44157356 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 11 |
| Conread position: | 75-480 |
| Cow position: | chr11:39833222-39833644 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 8 |
| Conread position: | 78-482 |
| Cow position: | chr11:20921278-20920853 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 78-482 |
| Cow position: | chr11:32450335-32450759 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 78-482 |
| Cow position: | chr11:57628579-57628154 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 84-383 |
| Cow position: | chr11:81552754-81552444 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 93-279 |
| Cow position: | chr11:7687403-7687589 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 113 |
| Conread position: | 93-454 |
| Cow position: | chr11:75919903-75920277 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 93-482 |
| Cow position: | chr11:44861043-44860637 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-482 |
| Cow position: | chr11:61401555-61401159 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 93-482 |
| Cow position: | chr11:72110479-72110073 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 94-482 |
| Cow position: | chr11:4271384-4270979 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 116-281 |
| Cow position: | chr11:19220259-19220092 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 130-390 |
| Cow position: | chr11:17924922-17924643 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 119, 250 |
| Conread position: | 136-482 |
| Cow position: | chr11:8282605-8282968 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 136-488 |
| Cow position: | chr11:10049651-10050017 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 137-452 |
| Cow position: | chr11:24243001-24243320 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 167, 68 |
| Conread position: | 144-307 |
| Cow position: | chr11:21441276-21441443 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 145-445 |
| Cow position: | chr11:13067475-13067167 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 145-445 |
| Cow position: | chr11:13162529-13162837 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 147-482 |
| Cow position: | chr11:10089873-10090227 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 102, 66 |
| Conread position: | 168-482 |
| Cow position: | chr11:66726024-66726356 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 218 |
| Conread position: | 191-481 |
| Cow position: | chr11:37065542-37065230 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 192-408 |
| Cow position: | chr11:65161976-65161745 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 63 |
| Conread position: | 207-478 |
| Cow position: | chr11:32684886-32685173 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 207-482 |
| Cow position: | chr11:30186897-30187183 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 268 |
| Conread position: | 290-470 |
| Cow position: | chr11:17280595-17280414 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 311-482 |
| Cow position: | chr11:64045718-64045890 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 311-484 |
| Cow position: | chr11:40776822-40776648 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 312-482 |
| Cow position: | chr11:8519714-8519883 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 77, 132 |
| Conread position: | 312-489 |
| Cow position: | chr11:48084834-48085009 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 319-486 |
| Cow position: | chr11:3240377-3240541 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 326-473 |
| Cow position: | chr11:18073686-18073539 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 126 |
Show alignments to all cow chromosomes.