Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-237 |
| Cow position: | chr14:14422694-14422448 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 134 |
| Conread position: | 1-408 |
| Cow position: | chr14:46669643-46670068 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 1-470 |
| Cow position: | chr14:13326796-13326319 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-470 |
| Cow position: | chr14:44225729-44226219 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 226 |
| Conread position: | 1-471 |
| Cow position: | chr14:14309751-14309253 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 272 |
| Conread position: | 1-482 |
| Cow position: | chr14:44421871-44422388 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 1-482 |
| Cow position: | chr14:47654074-47654574 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 1-484 |
| Cow position: | chr14:30597055-30596548 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 1-484 |
| Cow position: | chr14:33235316-33235800 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 221 |
| Conread position: | 2-481 |
| Cow position: | chr14:17684713-17685229 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 143 |
| Conread position: | 3-482 |
| Cow position: | chr14:48406341-48405855 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 5-486 |
| Cow position: | chr14:7831220-7830702 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 348 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 13, 228 |
| Conread position: | 6-285 |
| Cow position: | chr14:48703925-48704218 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 165 |
| Conread position: | 6-482 |
| Cow position: | chr14:43034557-43034055 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 7-281 |
| Cow position: | chr14:44580263-44580537 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 7-381 |
| Cow position: | chr14:23529678-23529291 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 7-489 |
| Cow position: | chr14:47589197-47589707 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 200 |
| Conread position: | 8-482 |
| Cow position: | chr14:38145960-38146409 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 9-480 |
| Cow position: | chr14:43552742-43553253 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 11-471 |
| Cow position: | chr14:27992963-27992485 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 89 |
| Conread position: | 23-470 |
| Cow position: | chr14:48254970-48254493 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 207 |
| Conread position: | 26-476 |
| Cow position: | chr14:23690879-23690401 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 184 |
| Conread position: | 28-482 |
| Cow position: | chr14:28994508-28994020 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr14:37223249-37223736 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr14:45850575-45851056 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 28-487 |
| Cow position: | chr14:41755221-41755683 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 31-381 |
| Cow position: | chr14:31607566-31607197 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 31-482 |
| Cow position: | chr14:30585586-30585117 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 31-482 |
| Cow position: | chr14:47623919-47624394 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 305 |
| Conread position: | 31-484 |
| Cow position: | chr14:22018755-22019229 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 32-484 |
| Cow position: | chr14:13660635-13660156 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 61, 182 |
| Conread position: | 74-482 |
| Cow position: | chr14:45767412-45767836 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 75-482 |
| Cow position: | chr14:50109987-50110400 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 85-446 |
| Cow position: | chr14:34924971-34925349 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 93-203 |
| Cow position: | chr14:9516971-9516859 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 93-458 |
| Cow position: | chr14:17001631-17001244 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-476 |
| Cow position: | chr14:44685472-44685871 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 93-482 |
| Cow position: | chr14:11154729-11154332 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 93-482 |
| Cow position: | chr14:13302455-13302862 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 93-482 |
| Cow position: | chr14:16920258-16919856 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 93-482 |
| Cow position: | chr14:23901377-23900966 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 47, 387 |
| Conread position: | 93-482 |
| Cow position: | chr14:36967683-36968089 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 93-482 |
| Cow position: | chr14:38816773-38816376 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 134 |
| Conread position: | 93-482 |
| Cow position: | chr14:45712551-45712152 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 94-482 |
| Cow position: | chr14:9044990-9045400 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 381 |
| Conread position: | 94-482 |
| Cow position: | chr14:38532873-38532458 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 94-488 |
| Cow position: | chr14:45303935-45303524 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 102-482 |
| Cow position: | chr14:46464503-46464907 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 129 |
| Conread position: | 103-471 |
| Cow position: | chr14:21743038-21743426 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 154 |
| Conread position: | 103-482 |
| Cow position: | chr14:15277144-15276746 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 106-492 |
| Cow position: | chr14:48824053-48824427 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 107-477 |
| Cow position: | chr14:16845883-16846267 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 109-482 |
| Cow position: | chr14:40170240-40169868 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 138-469 |
| Cow position: | chr14:30707197-30706866 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 122, 167 |
| Conread position: | 145-482 |
| Cow position: | chr14:41085304-41084951 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 159-482 |
| Cow position: | chr14:13778458-13778789 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 80, 51 |
| Conread position: | 174-482 |
| Cow position: | chr14:42123678-42123366 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 79 |
| Conread position: | 185-471 |
| Cow position: | chr14:41407339-41407642 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 71, 246 |
| Conread position: | 188-476 |
| Cow position: | chr14:5201536-5201253 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 205-481 |
| Cow position: | chr14:45916955-45917251 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 215-471 |
| Cow position: | chr14:37414341-37414063 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 223-482 |
| Cow position: | chr14:13480172-13479900 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 248-484 |
| Cow position: | chr14:19619808-19620056 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 269-471 |
| Cow position: | chr14:34775140-34775352 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 312-476 |
| Cow position: | chr14:44287587-44287422 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr14:22242543-22242715 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 312-484 |
| Cow position: | chr14:5511486-5511658 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 318-482 |
| Cow position: | chr14:44551551-44551716 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 326-459 |
| Cow position: | chr14:32534068-32533937 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.