Cow genome map

Conread name: Ss1.1-Pig4-TMW8032J18.3

Conread position: 1-279
Cow position: chr15:11598797-11598499 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 26

Conread position: 1-285
Cow position: chr15:6621650-6621941 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 79, 42

Conread position: 1-305
Cow position: chr15:496386-496710 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 152

Conread position: 1-445
Cow position: chr15:32286593-32287035 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 5

Conread position: 1-451
Cow position: chr15:4960977-4961436 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 301
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 143

Conread position: 1-468
Cow position: chr15:2006854-2007359 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 424

Conread position: 1-476
Cow position: chr15:4677820-4678306 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 322
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 81, 59

Conread position: 1-480
Cow position: chr15:2676984-2676478 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 234

Conread position: 1-481
Cow position: chr15:17787830-17787332 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 252

Conread position: 1-482
Cow position: chr15:2648341-2647820 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 337
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 43, 26

Conread position: 1-482
Cow position: chr15:6277941-6277424 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 345
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 35

Conread position: 1-482
Cow position: chr15:6472589-6472081 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 343
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 150

Conread position: 1-482
Cow position: chr15:11624236-11624745 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 201

Conread position: 1-482
Cow position: chr15:17219551-17219035 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 73

Conread position: 1-482
Cow position: chr15:21960827-21961343 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 219

Conread position: 1-482
Cow position: chr15:22920446-22920961 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 341
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 36, 130

Conread position: 1-482
Cow position: chr15:35747610-35748129 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 281

Conread position: 1-482
Cow position: chr15:36648228-36648743 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 138

Conread position: 1-482
Cow position: chr15:36970238-36970760 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 341
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 36, 24

Conread position: 1-484
Cow position: chr15:7789030-7788533 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 36

Conread position: 1-486
Cow position: chr15:4670738-4671267 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 345
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 121

Conread position: 1-488
Cow position: chr15:690124-690631 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 130

Conread position: 1-492
Cow position: chr15:32680230-32679713 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 344
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 229

Conread position: 2-488
Cow position: chr15:7836557-7837085 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 3-427
Cow position: chr15:1253631-1254077 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 127

Conread position: 4-470
Cow position: chr15:7894869-7894406 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 313
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 89, 19

Conread position: 4-476
Cow position: chr15:17291774-17292268 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 332
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 23, 179

Conread position: 4-482
Cow position: chr15:6078064-6078576 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 333
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 91, 26

Conread position: 4-482
Cow position: chr15:17272048-17271561 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 305
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 22, 275

Conread position: 7-281
Cow position: chr15:10479371-10479086 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 124

Conread position: 7-376
Cow position: chr15:6326838-6326471 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 36

Conread position: 7-429
Cow position: chr15:21816420-21815962 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 246

Conread position: 7-482
Cow position: chr15:36641954-36642450 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 124

Conread position: 7-482
Cow position: chr15:51800068-51800560 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 328
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 39, 114

Conread position: 7-493
Cow position: chr15:1662714-1663216 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 341
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 21

Conread position: 9-281
Cow position: chr15:20080182-20079888 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 153

Conread position: 10-464
Cow position: chr15:7927954-7928437 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 324
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 35, 240

Conread position: 15-480
Cow position: chr15:8407895-8408388 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 239

Conread position: 22-470
Cow position: chr15:35734805-35735279 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 316
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 66, 21

Conread position: 23-482
Cow position: chr15:4384618-4385103 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 24-484
Cow position: chr15:53338384-53338861 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 311
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 69, 47

Conread position: 25-292
Cow position: chr15:685511-685798 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 230

Conread position: 25-476
Cow position: chr15:370303-369852 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 292
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 277

Conread position: 26-484
Cow position: chr15:324295-324774 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 324
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 23, 5

Conread position: 27-390
Cow position: chr15:49676377-49676756 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 265
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 54, 9

Conread position: 28-409
Cow position: chr15:3843473-3843064 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 277
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 12, 103

Conread position: 28-482
Cow position: chr15:2076005-2076483 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 313
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 121

Conread position: 28-482
Cow position: chr15:15347772-15347284 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 316
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 28-482
Cow position: chr15:37391856-37392332 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 315
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 108

Conread position: 28-482
Cow position: chr15:41365531-41366015 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 18, 137

Conread position: 28-482
Cow position: chr15:42936062-42936549 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 321
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 28-482
Cow position: chr15:51215942-51216424 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 316
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 21, 247

Conread position: 28-488
Cow position: chr15:31358252-31358727 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 314
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 49

Conread position: 31-467
Cow position: chr15:40104823-40105285 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 95

Conread position: 31-482
Cow position: chr15:4733216-4733694 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 176

Conread position: 31-482
Cow position: chr15:4921498-4921986 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 314
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 94

Conread position: 31-493
Cow position: chr15:12421812-12421319 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 323
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 94

Conread position: 31-497
Cow position: chr15:1781607-1782106 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 454

Conread position: 50-482
Cow position: chr15:15266283-15265825 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 150

Conread position: 74-481
Cow position: chr15:6554445-6554020 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 281
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 20

Conread position: 91-489
Cow position: chr15:20357837-20357445 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 114

Conread position: 93-418
Cow position: chr15:22204688-22204341 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 93-467
Cow position: chr15:4630483-4630095 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 266
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 91

Conread position: 93-475
Cow position: chr15:36627222-36626842 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 40, 22

Conread position: 93-476
Cow position: chr15:10787666-10787299 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 40, 12

Conread position: 93-482
Cow position: chr15:525428-525014 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 271
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 29, 351

Conread position: 93-482
Cow position: chr15:4170266-4169863 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 147, 119

Conread position: 93-482
Cow position: chr15:29009268-29009675 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 319

Conread position: 93-482
Cow position: chr15:42490630-42491039 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 275
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 27, 48

Conread position: 94-270
Cow position: chr15:5070823-5070653 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 37, 20

Conread position: 94-484
Cow position: chr15:24793483-24793884 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 278
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 139, 30

Conread position: 96-484
Cow position: chr15:38979346-38979757 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 81

Conread position: 98-453
Cow position: chr15:12614496-12614874 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 31, 326

Conread position: 105-482
Cow position: chr15:32733347-32732954 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 261
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 71

Conread position: 109-482
Cow position: chr15:18023338-18022940 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 106

Conread position: 136-479
Cow position: chr15:3038038-3037680 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 120, 12

Conread position: 155-482
Cow position: chr15:7522999-7522657 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 193

Conread position: 159-298
Cow position: chr15:32672368-32672511 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 120
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 159-482
Cow position: chr15:4681724-4682068 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 226
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 30

Conread position: 161-482
Cow position: chr15:25789472-25789134 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 41

Conread position: 178-476
Cow position: chr15:1834948-1834631 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 212
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 181-484
Cow position: chr15:16542183-16542507 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 70, 0

Conread position: 214-481
Cow position: chr15:7922093-7921807 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 210

Conread position: 242-464
Cow position: chr15:24715806-24716042 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 133

Conread position: 256-482
Cow position: chr15:6593339-6593109 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 6

Conread position: 279-482
Cow position: chr15:6621964-6622175 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 151

Conread position: 318-482
Cow position: chr15:2924560-2924721 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 106

Conread position: 324-482
Cow position: chr15:35753921-35753763 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 65, 149

Show alignments to all cow chromosomes.