Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-281 |
| Cow position: | chr16:55080384-55080088 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 202 |
| Conread position: | 1-303 |
| Cow position: | chr16:13017898-13018205 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 1-388 |
| Cow position: | chr16:44388589-44388185 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 1-464 |
| Cow position: | chr16:31376259-31375811 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 1-481 |
| Cow position: | chr16:5660835-5661337 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 474 |
| Conread position: | 1-482 |
| Cow position: | chr16:7905611-7906107 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 300 |
| Conread position: | 1-483 |
| Cow position: | chr16:51685417-51685926 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 1-488 |
| Cow position: | chr16:6549553-6549030 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 2-482 |
| Cow position: | chr16:26662722-26663237 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 2-482 |
| Cow position: | chr16:36232629-36232127 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 225 |
| Conread position: | 2-482 |
| Cow position: | chr16:47562664-47563178 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 50, 363 |
| Conread position: | 4-389 |
| Cow position: | chr16:18688149-18687731 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 4-470 |
| Cow position: | chr16:49257593-49257107 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 14, 140 |
| Conread position: | 7-279 |
| Cow position: | chr16:23670611-23670327 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 7-315 |
| Cow position: | chr16:52815644-52815331 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 39, 211 |
| Conread position: | 9-396 |
| Cow position: | chr16:54647309-54647719 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 9-482 |
| Cow position: | chr16:42051367-42050899 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 10-488 |
| Cow position: | chr16:24155453-24154950 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 11-310 |
| Cow position: | chr16:14669279-14669595 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 13-487 |
| Cow position: | chr16:11052159-11052653 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 23-482 |
| Cow position: | chr16:23253506-23253019 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 23-484 |
| Cow position: | chr16:26518000-26517525 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 25-470 |
| Cow position: | chr16:31758-32214 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 25-483 |
| Cow position: | chr16:9929555-9930029 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 27-403 |
| Cow position: | chr16:5888487-5888875 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 191 |
| Conread position: | 28-480 |
| Cow position: | chr16:2411968-2411483 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 324 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 22, 199 |
| Conread position: | 28-482 |
| Cow position: | chr16:1568448-1567966 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 21, 195 |
| Conread position: | 28-482 |
| Cow position: | chr16:10437259-10437731 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr16:12538923-12538437 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 21, 382 |
| Conread position: | 28-482 |
| Cow position: | chr16:15491709-15492197 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr16:23982313-23982799 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 28-482 |
| Cow position: | chr16:25084623-25085109 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 212 |
| Conread position: | 28-482 |
| Cow position: | chr16:28472094-28471613 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr16:29046022-29046510 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-486 |
| Cow position: | chr16:8817103-8816612 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 31-280 |
| Cow position: | chr16:44965061-44965321 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 189 |
| Conread position: | 31-372 |
| Cow position: | chr16:29676301-29675933 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 15, 231 |
| Conread position: | 31-384 |
| Cow position: | chr16:16687874-16688223 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 197 |
| Conread position: | 31-482 |
| Cow position: | chr16:43898263-43897780 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 329 |
| Conread position: | 37-482 |
| Cow position: | chr16:25166721-25167150 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 81 |
| Conread position: | 43-482 |
| Cow position: | chr16:39820668-39821118 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 52 |
| Conread position: | 61-476 |
| Cow position: | chr16:836073-836511 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 73-482 |
| Cow position: | chr16:10808226-10808638 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 176, 21 |
| Conread position: | 74-482 |
| Cow position: | chr16:36362287-36361874 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 74-482 |
| Cow position: | chr16:56551189-56551608 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 78-482 |
| Cow position: | chr16:5918549-5918971 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 78-489 |
| Cow position: | chr16:28171294-28170868 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 93-310 |
| Cow position: | chr16:41758384-41758173 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 93-481 |
| Cow position: | chr16:55111768-55111356 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 93-482 |
| Cow position: | chr16:407953-407543 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 93-482 |
| Cow position: | chr16:5651830-5652227 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 93-482 |
| Cow position: | chr16:15183885-15184291 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 93-482 |
| Cow position: | chr16:20255232-20254823 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 93-482 |
| Cow position: | chr16:40297097-40296690 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 94-361 |
| Cow position: | chr16:29091904-29091621 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 164 |
| Conread position: | 94-466 |
| Cow position: | chr16:41559756-41560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 191, 17 |
| Conread position: | 94-484 |
| Cow position: | chr16:11111856-11111452 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 94-489 |
| Cow position: | chr16:28438702-28438292 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 109-482 |
| Cow position: | chr16:335396-335779 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 109-482 |
| Cow position: | chr16:5483416-5483811 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 138-482 |
| Cow position: | chr16:14666705-14666341 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 175-484 |
| Cow position: | chr16:16029949-16030274 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 74, 316 |
| Conread position: | 207-482 |
| Cow position: | chr16:25294037-25294317 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 312-488 |
| Cow position: | chr16:41758130-41757954 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 84, 111 |
| Conread position: | 324-488 |
| Cow position: | chr16:9777412-9777579 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.