Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-476 |
| Cow position: | chr17:4294928-4295405 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 181 |
| Conread position: | 1-476 |
| Cow position: | chr17:8208655-8209166 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 337 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 1-482 |
| Cow position: | chr17:15435339-15435857 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 489 |
| Conread position: | 1-482 |
| Cow position: | chr17:35591768-35592279 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 2-476 |
| Cow position: | chr17:22429936-22429434 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 428 |
| Conread position: | 2-482 |
| Cow position: | chr17:13929219-13929734 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-413 |
| Cow position: | chr17:15381555-15381977 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 95 |
| Conread position: | 7-414 |
| Cow position: | chr17:152906-152484 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 7-472 |
| Cow position: | chr17:2146763-2147227 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 9-470 |
| Cow position: | chr17:4286657-4287137 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 10-484 |
| Cow position: | chr17:1659000-1658496 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 335 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 25-439 |
| Cow position: | chr17:20401258-20401696 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 154 |
| Conread position: | 25-471 |
| Cow position: | chr17:4081228-4081687 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 25-479 |
| Cow position: | chr17:14893739-14894216 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 25-481 |
| Cow position: | chr17:24780623-24781112 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 28-481 |
| Cow position: | chr17:18104102-18103615 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr17:27345386-27345865 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 358 |
| Conread position: | 28-484 |
| Cow position: | chr17:13857195-13856701 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 28-484 |
| Cow position: | chr17:25737242-25737731 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-283 |
| Cow position: | chr17:13893950-13893687 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 31-482 |
| Cow position: | chr17:16859973-16859495 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 31-487 |
| Cow position: | chr17:6002428-6001947 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 194 |
| Conread position: | 32-481 |
| Cow position: | chr17:23857449-23856969 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 186 |
| Conread position: | 33-482 |
| Cow position: | chr17:11088138-11087658 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 74-482 |
| Cow position: | chr17:6089524-6089095 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 78-482 |
| Cow position: | chr17:15143722-15143301 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 173, 16 |
| Conread position: | 78-497 |
| Cow position: | chr17:43988179-43988615 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 93-286 |
| Cow position: | chr17:3710404-3710211 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 158, 20 |
| Conread position: | 93-470 |
| Cow position: | chr17:2587991-2588360 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 93-476 |
| Cow position: | chr17:18185869-18185473 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 232 |
| Conread position: | 93-481 |
| Cow position: | chr17:15370732-15371115 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 93-482 |
| Cow position: | chr17:3643181-3642770 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-484 |
| Cow position: | chr17:16889780-16890192 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 94-467 |
| Cow position: | chr17:20183569-20183180 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 155, 119 |
| Conread position: | 103-482 |
| Cow position: | chr17:6259510-6259910 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 39, 397 |
| Conread position: | 115-482 |
| Cow position: | chr17:2287068-2287452 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 168, 111 |
| Conread position: | 117-281 |
| Cow position: | chr17:22142489-22142324 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 145-387 |
| Cow position: | chr17:18301936-18301700 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 177-476 |
| Cow position: | chr17:18027016-18026697 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 258-482 |
| Cow position: | chr17:181204-181429 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 196 |
| Conread position: | 324-482 |
| Cow position: | chr17:40804723-40804882 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 324-484 |
| Cow position: | chr17:249843-250007 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 36 |
Show alignments to all cow chromosomes.