Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-472 |
| Cow position: | chr18:44601295-44601784 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 150 |
| Conread position: | 1-476 |
| Cow position: | chr18:23944619-23944107 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 233 |
| Conread position: | 1-476 |
| Cow position: | chr18:33335624-33336130 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 1-482 |
| Cow position: | chr18:11275336-11274832 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 1-482 |
| Cow position: | chr18:33358620-33359139 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 1-482 |
| Cow position: | chr18:39748334-39748852 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 133 |
| Conread position: | 1-482 |
| Cow position: | chr18:51257735-51258257 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 211 |
| Conread position: | 1-484 |
| Cow position: | chr18:48221630-48222154 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 1-484 |
| Cow position: | chr18:54024603-54024084 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 338 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 1-493 |
| Cow position: | chr18:2019927-2019400 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 2-488 |
| Cow position: | chr18:46878218-46877729 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 6-483 |
| Cow position: | chr18:20832619-20833112 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 7-279 |
| Cow position: | chr18:45958459-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 7-478 |
| Cow position: | chr18:18897270-18897763 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 88 |
| Conread position: | 7-481 |
| Cow position: | chr18:9187004-9186502 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 7-482 |
| Cow position: | chr18:16393881-16393373 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 268 |
| Conread position: | 10-482 |
| Cow position: | chr18:37599760-37599268 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 217 |
| Conread position: | 19-453 |
| Cow position: | chr18:54172066-54171615 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 207 |
| Conread position: | 19-458 |
| Cow position: | chr18:29945987-29946432 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 78 |
| Conread position: | 23-482 |
| Cow position: | chr18:35335271-35335753 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 166 |
| Conread position: | 25-482 |
| Cow position: | chr18:16533769-16534252 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 25-482 |
| Cow position: | chr18:22602270-22602761 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 21, 462 |
| Conread position: | 28-482 |
| Cow position: | chr18:14415765-14416250 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr18:16176820-16176340 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 28-482 |
| Cow position: | chr18:37504851-37505338 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 28-484 |
| Cow position: | chr18:40478169-40478659 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-489 |
| Cow position: | chr18:36508119-36508613 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-458 |
| Cow position: | chr18:43200855-43201304 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 31-476 |
| Cow position: | chr18:41841036-41840557 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 31-482 |
| Cow position: | chr18:6869465-6868985 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 31-482 |
| Cow position: | chr18:43147135-43146652 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 196 |
| Conread position: | 73-482 |
| Cow position: | chr18:47719721-47719310 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 81-470 |
| Cow position: | chr18:2887171-2886760 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 377 |
| Conread position: | 91-484 |
| Cow position: | chr18:16863938-16864337 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 93-467 |
| Cow position: | chr18:53785704-53786098 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 162, 119 |
| Conread position: | 93-481 |
| Cow position: | chr18:23797514-23797920 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 93-482 |
| Cow position: | chr18:28974037-28973629 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 93-482 |
| Cow position: | chr18:29236681-29237082 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 93-482 |
| Cow position: | chr18:47741881-47742292 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 382 |
| Conread position: | 93-482 |
| Cow position: | chr18:51310446-51310859 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 95-415 |
| Cow position: | chr18:22869620-22869944 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 102-281 |
| Cow position: | chr18:35288402-35288586 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 105-476 |
| Cow position: | chr18:51341561-51341954 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 370 |
| Conread position: | 159-484 |
| Cow position: | chr18:5980373-5980705 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 161-480 |
| Cow position: | chr18:14130322-14130656 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 177-410 |
| Cow position: | chr18:36258408-36258160 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 209-480 |
| Cow position: | chr18:114375-114661 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 251 |
| Conread position: | 312-476 |
| Cow position: | chr18:25350768-25350933 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr18:46869075-46868915 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 312-492 |
| Cow position: | chr18:32652322-32652503 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-493 |
| Cow position: | chr18:16843233-16843053 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 326-482 |
| Cow position: | chr18:19539463-19539306 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 334-482 |
| Cow position: | chr18:27987185-27987334 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.