Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-246 |
| Cow position: | chr22:10964842-10965112 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-253 |
| Cow position: | chr22:35943734-35943466 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-264 |
| Cow position: | chr22:41474669-41474389 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 45 |
| Conread position: | 1-279 |
| Cow position: | chr22:6984914-6985215 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-456 |
| Cow position: | chr22:44369954-44369470 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 1-463 |
| Cow position: | chr22:36736433-36736920 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 40, 146 |
| Conread position: | 1-476 |
| Cow position: | chr22:5672398-5672912 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 1-481 |
| Cow position: | chr22:871176-870686 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 1-482 |
| Cow position: | chr22:693299-693807 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1-482 |
| Cow position: | chr22:5233637-5233124 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 1-482 |
| Cow position: | chr22:8136532-8136020 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 222 |
| Conread position: | 1-482 |
| Cow position: | chr22:10546310-10546826 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 487 |
| Conread position: | 1-482 |
| Cow position: | chr22:32485668-32485172 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 1-482 |
| Cow position: | chr22:39882513-39881995 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 1-488 |
| Cow position: | chr22:3278690-3278167 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 488 |
| Conread position: | 1-489 |
| Cow position: | chr22:293497-292982 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 451 |
| Conread position: | 2-284 |
| Cow position: | chr22:13493196-13493468 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 7-284 |
| Cow position: | chr22:9657990-9658287 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 19-482 |
| Cow position: | chr22:118133-117661 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 288 |
| Conread position: | 22-482 |
| Cow position: | chr22:36861843-36861349 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 23-489 |
| Cow position: | chr22:35672667-35672168 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 456 |
| Conread position: | 25-476 |
| Cow position: | chr22:24949520-24950005 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 462 |
| Conread position: | 25-482 |
| Cow position: | chr22:7277213-7277702 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-482 |
| Cow position: | chr22:27310086-27309592 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 465 |
| Conread position: | 25-482 |
| Cow position: | chr22:46853042-46853523 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 312 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 25-492 |
| Cow position: | chr22:36267066-36267555 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 28-459 |
| Cow position: | chr22:37131345-37131803 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 28-469 |
| Cow position: | chr22:31335339-31334867 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 397 |
| Conread position: | 28-481 |
| Cow position: | chr22:37073474-37073033 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 28-482 |
| Cow position: | chr22:1319089-1319578 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 28-482 |
| Cow position: | chr22:17329046-17328558 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr22:19144004-19143518 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr22:31313038-31313522 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr22:34168025-34168513 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr22:39469824-39469342 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr22:42990865-42991353 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 28-488 |
| Cow position: | chr22:44933673-44934166 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 31-464 |
| Cow position: | chr22:5933283-5932833 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 15, 285 |
| Conread position: | 31-484 |
| Cow position: | chr22:1270801-1270352 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 103 |
| Conread position: | 32-484 |
| Cow position: | chr22:6503973-6503494 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 334 |
| Conread position: | 43-453 |
| Cow position: | chr22:33350879-33351320 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 48, 356 |
| Conread position: | 77-482 |
| Cow position: | chr22:16200248-16200655 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 174, 17 |
| Conread position: | 93-457 |
| Cow position: | chr22:8149764-8149396 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 213 |
| Conread position: | 93-484 |
| Cow position: | chr22:13675387-13674989 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 155, 319 |
| Conread position: | 93-486 |
| Cow position: | chr22:560929-560520 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 94-281 |
| Cow position: | chr22:11782760-11782576 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 94-442 |
| Cow position: | chr22:27386660-27386290 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 94-476 |
| Cow position: | chr22:13917278-13917677 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 95-223 |
| Cow position: | chr22:8874739-8874867 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 102-364 |
| Cow position: | chr22:13737667-13737411 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 105-482 |
| Cow position: | chr22:298546-298160 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 116-480 |
| Cow position: | chr22:525881-525514 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 129-482 |
| Cow position: | chr22:34606871-34607243 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 290 |
| Conread position: | 130-277 |
| Cow position: | chr22:41237701-41237848 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 120, 57 |
| Conread position: | 152-472 |
| Cow position: | chr22:44475083-44475415 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 15, 165 |
| Conread position: | 159-482 |
| Cow position: | chr22:46547826-46547483 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 162-482 |
| Cow position: | chr22:36533896-36533562 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 165-354 |
| Cow position: | chr22:307452-307650 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 180-466 |
| Cow position: | chr22:45975837-45976134 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 196-484 |
| Cow position: | chr22:1048286-1048586 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 170 |
| Conread position: | 201-482 |
| Cow position: | chr22:36581286-36580998 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 210-482 |
| Cow position: | chr22:8874883-8875168 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 256-493 |
| Cow position: | chr22:41238118-41238366 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 309-456 |
| Cow position: | chr22:21365401-21365254 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 311-497 |
| Cow position: | chr22:6020671-6020859 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 312-480 |
| Cow position: | chr22:11782518-11782347 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 325-483 |
| Cow position: | chr22:44396474-44396632 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 325-484 |
| Cow position: | chr22:41419672-41419511 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 326-469 |
| Cow position: | chr22:35943182-35943038 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.