Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-203 |
| Cow position: | chr24:8153070-8152866 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 1-307 |
| Cow position: | chr24:36296920-36297235 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 1-433 |
| Cow position: | chr24:6047998-6048476 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 39, 464 |
| Conread position: | 1-463 |
| Cow position: | chr24:16649548-16649069 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 246 |
| Conread position: | 1-464 |
| Cow position: | chr24:15392551-15392090 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 1-466 |
| Cow position: | chr24:40654154-40654638 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 1-470 |
| Cow position: | chr24:12114285-12113792 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 134 |
| Conread position: | 1-482 |
| Cow position: | chr24:6537307-6537808 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 1-482 |
| Cow position: | chr24:12798006-12797501 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 1-484 |
| Cow position: | chr24:14873597-14873081 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 209 |
| Conread position: | 1-485 |
| Cow position: | chr24:6351938-6352455 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 245 |
| Conread position: | 1-488 |
| Cow position: | chr24:6335440-6335956 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 349 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 4-482 |
| Cow position: | chr24:4415767-4415262 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 6-471 |
| Cow position: | chr24:1447328-1447812 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 107, 140 |
| Conread position: | 9-459 |
| Cow position: | chr24:39678196-39678653 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 20-482 |
| Cow position: | chr24:44017317-44017813 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 467 |
| Conread position: | 22-484 |
| Cow position: | chr24:12568028-12568496 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 6 |
| Conread position: | 25-286 |
| Cow position: | chr24:584420-584152 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 11, 212 |
| Conread position: | 25-375 |
| Cow position: | chr24:2635896-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 357 |
| Conread position: | 25-459 |
| Cow position: | chr24:35838848-35838372 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 271 |
| Conread position: | 25-470 |
| Cow position: | chr24:36707636-36708101 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 25-482 |
| Cow position: | chr24:6083793-6084284 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 21, 462 |
| Conread position: | 25-482 |
| Cow position: | chr24:6434017-6434507 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 372 |
| Conread position: | 25-498 |
| Cow position: | chr24:9188955-9188447 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 462 |
| Conread position: | 28-482 |
| Cow position: | chr24:12085979-12086465 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-482 |
| Cow position: | chr24:19833163-19833652 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 31-464 |
| Cow position: | chr24:35841831-35841374 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 161 |
| Conread position: | 34-472 |
| Cow position: | chr24:17303801-17303355 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 39-236 |
| Cow position: | chr24:30117290-30117490 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 43-285 |
| Cow position: | chr24:14282794-14282557 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 90-336 |
| Cow position: | chr24:6511278-6511014 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 93-480 |
| Cow position: | chr24:22951992-22952401 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-482 |
| Cow position: | chr24:14584950-14585343 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 94-458 |
| Cow position: | chr24:12161736-12162118 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 272 |
| Conread position: | 140-431 |
| Cow position: | chr24:38635666-38635970 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 116, 32 |
| Conread position: | 223-481 |
| Cow position: | chr24:14300830-14301110 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 248-482 |
| Cow position: | chr24:12335740-12335507 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 249-462 |
| Cow position: | chr24:13524136-13524351 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 124 |
| Conread position: | 312-482 |
| Cow position: | chr24:1438090-1437921 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 312-482 |
| Cow position: | chr24:29187379-29187550 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 325-480 |
| Cow position: | chr24:6510723-6510567 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.