Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-381 |
| Cow position: | chr28:10591667-10591263 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 1-411 |
| Cow position: | chr28:15585101-15585536 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 1-476 |
| Cow position: | chr28:7821969-7822477 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 1-476 |
| Cow position: | chr28:24667318-24667799 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 120, 42 |
| Conread position: | 1-479 |
| Cow position: | chr28:2591625-2592136 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 341 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 1-482 |
| Cow position: | chr28:4381105-4380619 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 81, 180 |
| Conread position: | 1-482 |
| Cow position: | chr28:13441173-13440651 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 493 |
| Conread position: | 1-482 |
| Cow position: | chr28:18102201-18101718 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 64 |
| Conread position: | 1-484 |
| Cow position: | chr28:21358724-21359229 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 2-482 |
| Cow position: | chr28:3193070-3192566 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 2-482 |
| Cow position: | chr28:33252049-33252537 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 126, 41 |
| Conread position: | 5-471 |
| Cow position: | chr28:34648643-34649157 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 7-468 |
| Cow position: | chr28:22827774-22828225 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 19-476 |
| Cow position: | chr28:7901086-7901574 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 333 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 25-482 |
| Cow position: | chr28:8721707-8721223 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 25-482 |
| Cow position: | chr28:14750283-14750772 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 263 |
| Conread position: | 28-458 |
| Cow position: | chr28:9155546-9155079 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 12, 198 |
| Conread position: | 28-476 |
| Cow position: | chr28:782136-782615 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 28-480 |
| Cow position: | chr28:1815129-1814644 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr28:5565599-5566079 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 393 |
| Conread position: | 28-482 |
| Cow position: | chr28:7001726-7002215 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr28:17388219-17388707 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr28:22261413-22260925 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr28:32792641-32792154 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 21, 199 |
| Conread position: | 28-483 |
| Cow position: | chr28:1387652-1387174 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 31-482 |
| Cow position: | chr28:8378309-8378794 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 62, 93 |
| Conread position: | 31-482 |
| Cow position: | chr28:9953876-9954358 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 32-426 |
| Cow position: | chr28:7816976-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 74-482 |
| Cow position: | chr28:2989885-2989491 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 175, 20 |
| Conread position: | 93-378 |
| Cow position: | chr28:24652106-24652401 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-418 |
| Cow position: | chr28:15950796-15951141 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 93-482 |
| Cow position: | chr28:2083419-2083821 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 93-482 |
| Cow position: | chr28:17667697-17667288 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 100-482 |
| Cow position: | chr28:1504677-1505077 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 102-482 |
| Cow position: | chr28:5114976-5114586 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 203 |
| Conread position: | 109-477 |
| Cow position: | chr28:11027121-11026745 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 115-484 |
| Cow position: | chr28:22065898-22065513 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 122-482 |
| Cow position: | chr28:7740340-7740711 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 135, 7 |
| Conread position: | 134-283 |
| Cow position: | chr28:17311772-17311924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 155-482 |
| Cow position: | chr28:9137170-9136826 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 76, 58 |
| Conread position: | 207-476 |
| Cow position: | chr28:12233066-12232782 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 253-483 |
| Cow position: | chr28:18181154-18180927 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 133, 206 |
| Conread position: | 297-482 |
| Cow position: | chr28:29819773-29819959 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 303-488 |
| Cow position: | chr28:1931938-1931753 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 307-482 |
| Cow position: | chr28:17311996-17312162 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 312-482 |
| Cow position: | chr28:2846118-2845949 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 168, 83 |
| Conread position: | 312-482 |
| Cow position: | chr28:5751652-5751480 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr28:5797487-5797657 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 324-482 |
| Cow position: | chr28:5800690-5800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 142 |
Show alignments to all cow chromosomes.