Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-345 |
| Cow position: | chr29:2368215-2367856 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 1-476 |
| Cow position: | chr29:104256-104752 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 1-479 |
| Cow position: | chr29:16769806-16770310 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 1-479 |
| Cow position: | chr29:19893434-19893961 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 226 |
| Conread position: | 1-482 |
| Cow position: | chr29:15950506-15950000 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 1-482 |
| Cow position: | chr29:16017457-16016962 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 2-482 |
| Cow position: | chr29:32539482-32540001 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 414 |
| Conread position: | 3-452 |
| Cow position: | chr29:4635289-4634815 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 300 |
| Conread position: | 6-484 |
| Cow position: | chr29:14013147-14013657 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 223 |
| Conread position: | 6-484 |
| Cow position: | chr29:14073264-14072754 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 223 |
| Conread position: | 7-470 |
| Cow position: | chr29:1714936-1715421 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 9-482 |
| Cow position: | chr29:30811229-30811719 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 71 |
| Conread position: | 11-482 |
| Cow position: | chr29:11841370-11841853 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 13-482 |
| Cow position: | chr29:27041072-27040578 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 16-315 |
| Cow position: | chr29:34609249-34608945 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 19-281 |
| Cow position: | chr29:32640484-32640751 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 25-264 |
| Cow position: | chr29:9855215-9854965 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 26-482 |
| Cow position: | chr29:25932842-25932353 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 23, 186 |
| Conread position: | 28-469 |
| Cow position: | chr29:7431512-7431037 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-471 |
| Cow position: | chr29:40503275-40502800 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-480 |
| Cow position: | chr29:26165118-26164633 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr29:2841661-2841182 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 28-482 |
| Cow position: | chr29:19623540-19623056 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr29:19652812-19653299 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr29:34800102-34799617 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 28-482 |
| Cow position: | chr29:38226698-38227171 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 21, 251 |
| Conread position: | 28-482 |
| Cow position: | chr29:39080002-39079521 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-482 |
| Cow position: | chr29:2099551-2100036 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 31-482 |
| Cow position: | chr29:45459426-45459904 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 32-454 |
| Cow position: | chr29:24198898-24198456 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 74-403 |
| Cow position: | chr29:28060903-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 74-440 |
| Cow position: | chr29:15969385-15969002 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 177, 20 |
| Conread position: | 74-482 |
| Cow position: | chr29:11049047-11049469 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 74-484 |
| Cow position: | chr29:10824196-10823776 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 78-484 |
| Cow position: | chr29:35296644-35297067 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 158, 16 |
| Conread position: | 92-482 |
| Cow position: | chr29:35196457-35196855 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 157, 23 |
| Conread position: | 93-330 |
| Cow position: | chr29:30108883-30109109 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 158, 20 |
| Conread position: | 93-482 |
| Cow position: | chr29:48695-48287 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 93-482 |
| Cow position: | chr29:6266713-6266310 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 226 |
| Conread position: | 93-482 |
| Cow position: | chr29:9643940-9643565 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 93-482 |
| Cow position: | chr29:10648464-10648060 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 158, 20 |
| Conread position: | 93-482 |
| Cow position: | chr29:17662702-17663095 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 93-482 |
| Cow position: | chr29:23975613-23976031 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 137 |
| Conread position: | 94-509 |
| Cow position: | chr29:11855381-11855824 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 96-482 |
| Cow position: | chr29:21543582-21543178 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 44, 299 |
| Conread position: | 106-483 |
| Cow position: | chr29:8063110-8062706 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 185 |
| Conread position: | 163-482 |
| Cow position: | chr29:14585780-14586113 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 203 |
| Conread position: | 192-480 |
| Cow position: | chr29:45587464-45587171 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 126 |
| Conread position: | 303-492 |
| Cow position: | chr29:12796353-12796164 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 324-482 |
| Cow position: | chr29:42802177-42802335 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 54 |
Show alignments to all cow chromosomes.