Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-249 |
| Cow position: | chr4:27442488-27442751 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 1-482 |
| Cow position: | chr4:3829888-3830389 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 196 |
| Conread position: | 1-482 |
| Cow position: | chr4:5879577-5880079 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 385 |
| Conread position: | 1-482 |
| Cow position: | chr4:8598739-8598243 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 1-482 |
| Cow position: | chr4:15263563-15263076 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 48 |
| Conread position: | 1-482 |
| Cow position: | chr4:22471602-22472082 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 1-482 |
| Cow position: | chr4:40824853-40824339 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 160 |
| Conread position: | 1-482 |
| Cow position: | chr4:47718199-47717693 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 1-484 |
| Cow position: | chr4:17531015-17530514 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 1-498 |
| Cow position: | chr4:6269229-6268697 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 348 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 45, 486 |
| Conread position: | 23-484 |
| Cow position: | chr4:1497327-1496843 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 24-482 |
| Cow position: | chr4:25600188-25599705 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 328 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 25-472 |
| Cow position: | chr4:39272515-39272032 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 26-476 |
| Cow position: | chr4:21338556-21338095 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 26-488 |
| Cow position: | chr4:28830463-28830949 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 28-476 |
| Cow position: | chr4:41330866-41331345 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-479 |
| Cow position: | chr4:29532288-29531804 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 21, 449 |
| Conread position: | 28-482 |
| Cow position: | chr4:3961021-3961505 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 28-482 |
| Cow position: | chr4:6490920-6490451 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 199 |
| Conread position: | 28-482 |
| Cow position: | chr4:16359318-16359797 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 28-482 |
| Cow position: | chr4:17926828-17926341 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 135 |
| Conread position: | 28-482 |
| Cow position: | chr4:18516322-18516810 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr4:43880536-43881022 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 418 |
| Conread position: | 28-482 |
| Cow position: | chr4:45049869-45049384 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 28-482 |
| Cow position: | chr4:48025828-48026311 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 28-488 |
| Cow position: | chr4:4905579-4906066 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 242 |
| Conread position: | 31-473 |
| Cow position: | chr4:496496-496053 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 31-476 |
| Cow position: | chr4:18425088-18424617 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 31-482 |
| Cow position: | chr4:30308023-30307545 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 31-482 |
| Cow position: | chr4:32211596-32212081 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 33-303 |
| Cow position: | chr4:11383843-11384127 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 33-482 |
| Cow position: | chr4:66179554-66179074 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 34-487 |
| Cow position: | chr4:66925437-66925915 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 236 |
| Conread position: | 74-279 |
| Cow position: | chr4:23114691-23114483 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 74-482 |
| Cow position: | chr4:12241734-12241304 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 93-473 |
| Cow position: | chr4:969536-969140 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 93-476 |
| Cow position: | chr4:602500-602901 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 158, 25 |
| Conread position: | 93-482 |
| Cow position: | chr4:355417-355823 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 93-482 |
| Cow position: | chr4:1931117-1930710 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 93-482 |
| Cow position: | chr4:26887340-26886949 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 93-482 |
| Cow position: | chr4:43320133-43319733 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 278 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 301 |
| Conread position: | 93-482 |
| Cow position: | chr4:51044377-51044020 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 93-487 |
| Cow position: | chr4:24445696-24445282 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 44, 167 |
| Conread position: | 93-537 |
| Cow position: | chr4:528496-528962 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 382 |
| Conread position: | 95-410 |
| Cow position: | chr4:40406079-40405754 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 96-454 |
| Cow position: | chr4:24198691-24198328 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 97-484 |
| Cow position: | chr4:54157535-54157911 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 99-480 |
| Cow position: | chr4:6215042-6214647 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 102-482 |
| Cow position: | chr4:11618377-11618767 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 109-411 |
| Cow position: | chr4:21564670-21564962 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 116-481 |
| Cow position: | chr4:4175963-4176342 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 166 |
| Conread position: | 117-484 |
| Cow position: | chr4:62565516-62565894 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 88 |
| Conread position: | 203-471 |
| Cow position: | chr4:23493361-23493638 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 179 |
| Conread position: | 228-465 |
| Cow position: | chr4:60673513-60673759 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 299-484 |
| Cow position: | chr4:61256626-61256807 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 131 |
| Conread position: | 312-482 |
| Cow position: | chr4:12587041-12587212 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr4:41119756-41119927 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 313-490 |
| Cow position: | chr4:27443198-27443378 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 319-482 |
| Cow position: | chr4:9587013-9587177 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 140 |
Show alignments to all cow chromosomes.