Cow genome map

Conread name: Ss1.1-Pig4-TMW8032J18.3

Conread position: 1-297
Cow position: chr5:28570185-28570500 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 1-476
Cow position: chr5:2530761-2531273 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 333
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 43, 489

Conread position: 1-482
Cow position: chr5:9686919-9686420 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 326
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 81, 280

Conread position: 1-482
Cow position: chr5:26769300-26769812 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 346
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 17, 110

Conread position: 1-482
Cow position: chr5:28030980-28031485 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 60

Conread position: 1-482
Cow position: chr5:32733756-32733244 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 202

Conread position: 1-482
Cow position: chr5:39165311-39164792 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 399

Conread position: 1-482
Cow position: chr5:45182608-45182095 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 332
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 142

Conread position: 1-482
Cow position: chr5:49181773-49182276 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 133

Conread position: 1-482
Cow position: chr5:61273675-61273179 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 320
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 13, 101

Conread position: 1-484
Cow position: chr5:49128743-49129230 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 46, 103

Conread position: 1-491
Cow position: chr5:34202434-34202952 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 357
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 17, 194

Conread position: 2-476
Cow position: chr5:26090330-26089829 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 339
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 11

Conread position: 2-482
Cow position: chr5:49101128-49101642 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 125

Conread position: 2-482
Cow position: chr5:49593971-49593447 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 255

Conread position: 2-484
Cow position: chr5:53627269-53626750 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 222

Conread position: 4-479
Cow position: chr5:24329800-24330278 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 19

Conread position: 6-440
Cow position: chr5:57366516-57366058 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 115

Conread position: 7-279
Cow position: chr5:30088215-30087934 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 84, 12

Conread position: 7-489
Cow position: chr5:23756081-23755604 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 308
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 141

Conread position: 9-279
Cow position: chr5:27488526-27488807 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 86, 27

Conread position: 9-284
Cow position: chr5:51771842-51771553 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 19

Conread position: 14-482
Cow position: chr5:45699785-45700274 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 165

Conread position: 19-482
Cow position: chr5:32945391-32945882 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 187

Conread position: 22-285
Cow position: chr5:27569669-27569948 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 26

Conread position: 22-476
Cow position: chr5:46659241-46659717 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 307
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 57, 21

Conread position: 22-482
Cow position: chr5:416206-415714 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 109

Conread position: 22-482
Cow position: chr5:32674208-32673732 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 323
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 73, 6

Conread position: 23-482
Cow position: chr5:55627520-55627994 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 306
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 102

Conread position: 25-482
Cow position: chr5:10776735-10776256 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 300
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 300

Conread position: 25-482
Cow position: chr5:29042029-29042519 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 324
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 409

Conread position: 25-482
Cow position: chr5:31706092-31706582 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 323
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 21, 404

Conread position: 25-482
Cow position: chr5:32771999-32772490 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 326
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 21, 462

Conread position: 25-482
Cow position: chr5:57483029-57482538 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 327
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 25-484
Cow position: chr5:27909750-27909262 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 320
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 105

Conread position: 26-482
Cow position: chr5:41359213-41358735 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 244

Conread position: 28-279
Cow position: chr5:58061302-58061051 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 94, 71

Conread position: 28-464
Cow position: chr5:3785332-3785780 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 296
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 97

Conread position: 28-481
Cow position: chr5:41530049-41529586 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 308
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 106

Conread position: 28-482
Cow position: chr5:2430611-2430124 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 28-482
Cow position: chr5:10918318-10918806 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 314
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 28-482
Cow position: chr5:37731866-37732354 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 28-482
Cow position: chr5:48809193-48808707 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 98

Conread position: 28-482
Cow position: chr5:49119757-49119273 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 311
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 28-484
Cow position: chr5:64782496-64782008 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 199

Conread position: 32-482
Cow position: chr5:4068515-4068998 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 323
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 159

Conread position: 38-482
Cow position: chr5:29436386-29435956 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 294
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 143

Conread position: 43-384
Cow position: chr5:27683221-27682861 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 45, 66

Conread position: 76-435
Cow position: chr5:16104182-16103817 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 39

Conread position: 93-376
Cow position: chr5:34696181-34696484 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 93-409
Cow position: chr5:56858099-56857769 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 129

Conread position: 93-482
Cow position: chr5:1342198-1341790 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 276
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 365

Conread position: 93-482
Cow position: chr5:28022764-28023161 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 20

Conread position: 93-482
Cow position: chr5:44459080-44459491 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 275
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 382

Conread position: 93-482
Cow position: chr5:46738987-46738577 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 276
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 55, 0

Conread position: 93-482
Cow position: chr5:58195600-58196010 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 276
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 71

Conread position: 93-484
Cow position: chr5:58056137-58055741 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 287
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 35, 47

Conread position: 93-489
Cow position: chr5:49518264-49518673 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 158, 20

Conread position: 94-484
Cow position: chr5:30578921-30579332 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 95-268
Cow position: chr5:49020081-49019904 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 118

Conread position: 95-480
Cow position: chr5:59845183-59844796 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 249
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 74

Conread position: 110-482
Cow position: chr5:41962618-41962230 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 266
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 27

Conread position: 111-472
Cow position: chr5:14659473-14659097 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 265
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 67

Conread position: 134-482
Cow position: chr5:58334943-58334587 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 230

Conread position: 153-481
Cow position: chr5:27652318-27651975 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 114, 23

Conread position: 156-468
Cow position: chr5:26069051-26068728 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 98, 206

Conread position: 156-482
Cow position: chr5:39872081-39872411 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 36

Conread position: 179-476
Cow position: chr5:52433662-52433969 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 72, 34

Conread position: 311-482
Cow position: chr5:27001446-27001617 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 87

Conread position: 312-482
Cow position: chr5:24108753-24108582 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 113

Conread position: 318-476
Cow position: chr5:57977102-57977260 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 71, 128

Conread position: 318-484
Cow position: chr5:5786764-5786597 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 324-479
Cow position: chr5:18653894-18654050 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 324-482
Cow position: chr5:73489712-73489553 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 324-484
Cow position: chr5:12644089-12643931 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 66, 83

Conread position: 326-482
Cow position: chr5:17774189-17774032 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.