Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-203 |
| Cow position: | chr6:6542376-6542587 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 1-252 |
| Cow position: | chr6:63198508-63198243 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 1-263 |
| Cow position: | chr6:45671898-45672174 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 1-265 |
| Cow position: | chr6:65007471-65007749 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 1-267 |
| Cow position: | chr6:31569298-31569018 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 1-307 |
| Cow position: | chr6:20496339-20496657 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 1-405 |
| Cow position: | chr6:68362686-68362249 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 1-461 |
| Cow position: | chr6:12093226-12092763 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 263 |
| Conread position: | 1-468 |
| Cow position: | chr6:39161840-39162321 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 1-482 |
| Cow position: | chr6:1384213-1383727 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 1-482 |
| Cow position: | chr6:19453557-19454065 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 1-482 |
| Cow position: | chr6:34024473-34024954 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 1-487 |
| Cow position: | chr6:59919645-59919130 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 432 |
| Conread position: | 2-274 |
| Cow position: | chr6:52804054-52804332 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 3-470 |
| Cow position: | chr6:525889-526376 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 3-482 |
| Cow position: | chr6:12095719-12095252 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 7-482 |
| Cow position: | chr6:35420926-35420457 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 10-334 |
| Cow position: | chr6:42564583-42564935 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 15-482 |
| Cow position: | chr6:48368061-48368525 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 22-205 |
| Cow position: | chr6:59478555-59478363 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 25-482 |
| Cow position: | chr6:701613-702105 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 24, 205 |
| Conread position: | 25-482 |
| Cow position: | chr6:13103718-13104208 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 28-482 |
| Cow position: | chr6:3278288-3277800 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 21, 164 |
| Conread position: | 28-482 |
| Cow position: | chr6:5951574-5951096 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 338 |
| Conread position: | 28-482 |
| Cow position: | chr6:8201395-8201887 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 21, 182 |
| Conread position: | 28-482 |
| Cow position: | chr6:27468921-27469398 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr6:27530336-27529857 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr6:29311158-29311641 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 28-482 |
| Cow position: | chr6:30478762-30479249 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 28-482 |
| Cow position: | chr6:34893347-34892856 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr6:35877054-35876568 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 28-484 |
| Cow position: | chr6:65880529-65881019 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-489 |
| Cow position: | chr6:55544664-55544170 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 32-482 |
| Cow position: | chr6:8761634-8761154 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 32-487 |
| Cow position: | chr6:20561442-20560957 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 34-449 |
| Cow position: | chr6:41552698-41553133 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 43-482 |
| Cow position: | chr6:59741371-59740908 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 12, 181 |
| Conread position: | 44-489 |
| Cow position: | chr6:10558962-10558503 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 48-482 |
| Cow position: | chr6:30275499-30275028 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 74-482 |
| Cow position: | chr6:33388558-33388988 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 78-476 |
| Cow position: | chr6:43617442-43617859 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 82-482 |
| Cow position: | chr6:13846775-13847182 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 381 |
| Conread position: | 93-312 |
| Cow position: | chr6:62488440-62488212 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 93-390 |
| Cow position: | chr6:11353475-11353798 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-427 |
| Cow position: | chr6:6476715-6476388 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 93-469 |
| Cow position: | chr6:35433285-35433670 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 93-481 |
| Cow position: | chr6:17045804-17046204 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 93-482 |
| Cow position: | chr6:10630206-10630605 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 282 |
| Conread position: | 93-482 |
| Cow position: | chr6:15141435-15141030 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 93-482 |
| Cow position: | chr6:44028790-44029193 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 93-482 |
| Cow position: | chr6:57870264-57869853 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 93-482 |
| Cow position: | chr6:65841334-65841734 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 29, 227 |
| Conread position: | 93-486 |
| Cow position: | chr6:15476026-15476443 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 93-488 |
| Cow position: | chr6:3889740-3889323 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 93-489 |
| Cow position: | chr6:15280803-15280395 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 93-491 |
| Cow position: | chr6:28474451-28474861 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 20 |
| Conread position: | 94-476 |
| Cow position: | chr6:13276543-13276944 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 273 |
| Conread position: | 97-390 |
| Cow position: | chr6:6619672-6619383 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 183, 17 |
| Conread position: | 102-481 |
| Cow position: | chr6:33459615-33460012 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 109-482 |
| Cow position: | chr6:62396918-62397318 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 118-482 |
| Cow position: | chr6:16051653-16052030 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 137, 141 |
| Conread position: | 145-471 |
| Cow position: | chr6:11402846-11403183 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 156-484 |
| Cow position: | chr6:24238869-24239217 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 162-482 |
| Cow position: | chr6:25214079-25214408 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 133, 70 |
| Conread position: | 181-481 |
| Cow position: | chr6:17099865-17099551 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 130 |
| Conread position: | 193-476 |
| Cow position: | chr6:32330951-32330646 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 217-482 |
| Cow position: | chr6:51190378-51190651 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 307-481 |
| Cow position: | chr6:63198101-63197927 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 311-476 |
| Cow position: | chr6:3148982-3149148 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 332-471 |
| Cow position: | chr6:31568800-31568662 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 333-482 |
| Cow position: | chr6:64715230-64715379 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.