Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-253 |
| Cow position: | chr7:41876760-41876504 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 39, 210 |
| Conread position: | 1-434 |
| Cow position: | chr7:21976017-21975545 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 233 |
| Conread position: | 1-458 |
| Cow position: | chr7:65497066-65496597 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 1-471 |
| Cow position: | chr7:41489853-41490340 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 1-476 |
| Cow position: | chr7:3154500-3154999 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 17, 180 |
| Conread position: | 1-482 |
| Cow position: | chr7:21309934-21310445 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 1-482 |
| Cow position: | chr7:26890525-26891047 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 347 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 1-484 |
| Cow position: | chr7:750645-751158 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 1-498 |
| Cow position: | chr7:7256938-7257452 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 468 |
| Conread position: | 2-172 |
| Cow position: | chr7:18962661-18962842 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 2-482 |
| Cow position: | chr7:446905-446391 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 339 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 91, 73 |
| Conread position: | 2-489 |
| Cow position: | chr7:59027737-59028236 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 242 |
| Conread position: | 3-482 |
| Cow position: | chr7:25439256-25439746 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 189 |
| Conread position: | 4-482 |
| Cow position: | chr7:38536254-38536748 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 6-486 |
| Cow position: | chr7:24056015-24056528 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 119 |
| Conread position: | 7-281 |
| Cow position: | chr7:60857624-60857349 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 7-390 |
| Cow position: | chr7:20307064-20306660 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 7-464 |
| Cow position: | chr7:59136155-59136629 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 188 |
| Conread position: | 7-475 |
| Cow position: | chr7:6489577-6489086 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 7-482 |
| Cow position: | chr7:58378468-58377970 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 229 |
| Conread position: | 9-472 |
| Cow position: | chr7:39556353-39555866 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 326 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 82, 138 |
| Conread position: | 10-513 |
| Cow position: | chr7:23835849-23836390 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 502 |
| Conread position: | 17-487 |
| Cow position: | chr7:63020595-63021090 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 19-452 |
| Cow position: | chr7:26850989-26851442 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 276 |
| Conread position: | 22-476 |
| Cow position: | chr7:5662124-5662608 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 25-416 |
| Cow position: | chr7:47374746-47375171 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 25-476 |
| Cow position: | chr7:52120321-52119851 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 25-489 |
| Cow position: | chr7:54602600-54603098 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 26-476 |
| Cow position: | chr7:1449245-1449718 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 312 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 28-471 |
| Cow position: | chr7:27786384-27786852 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 28-476 |
| Cow position: | chr7:20799679-20799208 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 28-482 |
| Cow position: | chr7:1372897-1372412 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 28-482 |
| Cow position: | chr7:34148862-34149338 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 28-482 |
| Cow position: | chr7:45949395-45948910 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 324 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 28-482 |
| Cow position: | chr7:55538164-55537677 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr7:67798604-67799091 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 199 |
| Conread position: | 28-483 |
| Cow position: | chr7:1400602-1400119 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 176 |
| Conread position: | 31-467 |
| Cow position: | chr7:993990-994458 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 15, 426 |
| Conread position: | 31-476 |
| Cow position: | chr7:1611445-1610977 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 161 |
| Conread position: | 31-482 |
| Cow position: | chr7:1357912-1357446 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 31-482 |
| Cow position: | chr7:19925056-19924584 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 31-482 |
| Cow position: | chr7:41487348-41487794 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 220 |
| Conread position: | 31-484 |
| Cow position: | chr7:68084561-68085030 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 32-482 |
| Cow position: | chr7:39791493-39791995 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 33-395 |
| Cow position: | chr7:26883885-26884277 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 327 |
| Conread position: | 33-482 |
| Cow position: | chr7:36085093-36085576 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 319 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 49, 174 |
| Conread position: | 46-390 |
| Cow position: | chr7:68523694-68523332 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 74-489 |
| Cow position: | chr7:8145426-8144997 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 76-484 |
| Cow position: | chr7:63385169-63385582 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 180, 18 |
| Conread position: | 91-254 |
| Cow position: | chr7:25686387-25686232 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 91-286 |
| Cow position: | chr7:27531034-27530840 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 92-390 |
| Cow position: | chr7:1405603-1405290 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 159, 94 |
| Conread position: | 92-482 |
| Cow position: | chr7:51013798-51014192 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 93-410 |
| Cow position: | chr7:102770-102436 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 93-464 |
| Cow position: | chr7:52804857-52804487 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 212 |
| Conread position: | 93-476 |
| Cow position: | chr7:41870099-41869712 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 93-481 |
| Cow position: | chr7:14139767-14139362 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 93-482 |
| Cow position: | chr7:3234854-3234443 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 47, 382 |
| Conread position: | 93-482 |
| Cow position: | chr7:30119708-30119314 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 359 |
| Conread position: | 93-482 |
| Cow position: | chr7:61559042-61559453 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 29, 382 |
| Conread position: | 93-497 |
| Cow position: | chr7:27102281-27101858 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 158, 50 |
| Conread position: | 93-498 |
| Cow position: | chr7:7297045-7296631 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 98-484 |
| Cow position: | chr7:47050537-47050925 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 117 |
| Conread position: | 99-303 |
| Cow position: | chr7:7084560-7084346 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 101-428 |
| Cow position: | chr7:67811959-67812303 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 338 |
| Conread position: | 102-481 |
| Cow position: | chr7:13537745-13537345 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 392 |
| Conread position: | 103-476 |
| Cow position: | chr7:68907686-68908061 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 103-482 |
| Cow position: | chr7:25101874-25102265 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 103-482 |
| Cow position: | chr7:62679803-62679430 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 108-484 |
| Cow position: | chr7:51084464-51084844 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 127 |
| Conread position: | 136-484 |
| Cow position: | chr7:68479041-68479409 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 138-482 |
| Cow position: | chr7:10431542-10431178 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 140-471 |
| Cow position: | chr7:68328559-68328901 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 143, 74 |
| Conread position: | 150-470 |
| Cow position: | chr7:20106401-20106068 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 101, 63 |
| Conread position: | 159-482 |
| Cow position: | chr7:35297374-35297031 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 187-480 |
| Cow position: | chr7:68478378-68478679 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 211-481 |
| Cow position: | chr7:19048938-19048656 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 211-482 |
| Cow position: | chr7:58993148-58993434 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 180 |
| Conread position: | 211-488 |
| Cow position: | chr7:27585146-27584861 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 312-488 |
| Cow position: | chr7:3730048-3730222 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 312-489 |
| Cow position: | chr7:33878297-33878124 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 317-482 |
| Cow position: | chr7:29470197-29470361 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 107 |
| Conread position: | 333-482 |
| Cow position: | chr7:5183495-5183645 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 347-488 |
| Cow position: | chr7:49290764-49290907 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.