Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-253 |
| Cow position: | chr8:38579390-38579114 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 265 |
| Conread position: | 1-278 |
| Cow position: | chr8:2885658-2885950 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-279 |
| Cow position: | chr8:11775377-11775662 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 144 |
| Conread position: | 1-470 |
| Cow position: | chr8:8229878-8229366 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-482 |
| Cow position: | chr8:8557223-8556721 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 1-482 |
| Cow position: | chr8:11970656-11970164 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 174 |
| Conread position: | 1-482 |
| Cow position: | chr8:44036855-44036352 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 47, 137 |
| Conread position: | 1-489 |
| Cow position: | chr8:46222408-46221898 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 1-489 |
| Cow position: | chr8:47670364-47670894 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-482 |
| Cow position: | chr8:8910143-8910648 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 89, 53 |
| Conread position: | 2-482 |
| Cow position: | chr8:27983892-27983368 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-476 |
| Cow position: | chr8:47884935-47885454 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 279 |
| Conread position: | 7-246 |
| Cow position: | chr8:42467311-42467550 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 7-286 |
| Cow position: | chr8:8904594-8904312 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 7-466 |
| Cow position: | chr8:23766475-23765987 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 25, 249 |
| Conread position: | 9-322 |
| Cow position: | chr8:48370948-48371263 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 22-482 |
| Cow position: | chr8:38607571-38607098 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 23-482 |
| Cow position: | chr8:5016116-5016608 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 26-476 |
| Cow position: | chr8:32930452-32930931 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 195 |
| Conread position: | 28-476 |
| Cow position: | chr8:45161419-45160953 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 28-480 |
| Cow position: | chr8:45448392-45448883 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 28-482 |
| Cow position: | chr8:3857072-3856587 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 28-482 |
| Cow position: | chr8:19050427-19050903 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 161 |
| Conread position: | 28-482 |
| Cow position: | chr8:38390308-38390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 182 |
| Conread position: | 28-482 |
| Cow position: | chr8:44244635-44244146 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr8:59262954-59262466 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-476 |
| Cow position: | chr8:47069863-47069384 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 456 |
| Conread position: | 31-482 |
| Cow position: | chr8:39196272-39195790 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 324 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 62, 348 |
| Conread position: | 31-484 |
| Cow position: | chr8:24876760-24876288 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 32-466 |
| Cow position: | chr8:12716300-12716748 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 97 |
| Conread position: | 32-480 |
| Cow position: | chr8:4686339-4686818 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 32-482 |
| Cow position: | chr8:15688206-15687730 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 34-231 |
| Cow position: | chr8:39160269-39160474 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 34-281 |
| Cow position: | chr8:12664069-12663810 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 50-254 |
| Cow position: | chr8:44713345-44713129 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 74-381 |
| Cow position: | chr8:44077018-44076718 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 174, 20 |
| Conread position: | 74-489 |
| Cow position: | chr8:25407447-25407879 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 75-476 |
| Cow position: | chr8:9540490-9540074 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 76-483 |
| Cow position: | chr8:47074270-47074696 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 78-482 |
| Cow position: | chr8:9275025-9275438 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 93-285 |
| Cow position: | chr8:36292187-36292381 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 93-427 |
| Cow position: | chr8:12543992-12543669 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 93-464 |
| Cow position: | chr8:9135873-9135492 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 190 |
| Conread position: | 93-476 |
| Cow position: | chr8:17311035-17311439 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 93-482 |
| Cow position: | chr8:9735265-9735674 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 93-482 |
| Cow position: | chr8:25522415-25522828 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 93-482 |
| Cow position: | chr8:50289134-50288724 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 93-482 |
| Cow position: | chr8:50993805-50994215 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 93-489 |
| Cow position: | chr8:2171362-2170945 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 374 |
| Conread position: | 94-482 |
| Cow position: | chr8:14928975-14928566 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 94-484 |
| Cow position: | chr8:11821334-11821742 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 96-484 |
| Cow position: | chr8:45189113-45189513 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 281 |
| Conread position: | 102-481 |
| Cow position: | chr8:13808628-13809027 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 102-482 |
| Cow position: | chr8:25776636-25776246 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 136-281 |
| Cow position: | chr8:8533756-8533609 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 136-471 |
| Cow position: | chr8:45693564-45693213 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 115, 74 |
| Conread position: | 136-482 |
| Cow position: | chr8:42759025-42759371 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 121, 147 |
| Conread position: | 156-482 |
| Cow position: | chr8:33430017-33430352 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 165-482 |
| Cow position: | chr8:27925417-27925742 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 182-478 |
| Cow position: | chr8:47491712-47491408 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 195-482 |
| Cow position: | chr8:25542654-25542930 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 194, 43 |
| Conread position: | 263-482 |
| Cow position: | chr8:21158606-21158391 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 311-482 |
| Cow position: | chr8:6065513-6065341 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 311-482 |
| Cow position: | chr8:51327825-51327997 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 312-482 |
| Cow position: | chr8:60060638-60060809 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-483 |
| Cow position: | chr8:12449204-12449376 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 313-491 |
| Cow position: | chr8:23217017-23217196 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 318-482 |
| Cow position: | chr8:42467587-42467752 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 327-482 |
| Cow position: | chr8:38578664-38578508 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.