Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032J18.3 |
| Conread position: | 1-235 |
| Cow position: | chr9:3394742-3394500 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 193 |
| Conread position: | 1-279 |
| Cow position: | chr9:59510159-59510470 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-303 |
| Cow position: | chr9:3024671-3024986 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 176 |
| Conread position: | 1-307 |
| Cow position: | chr9:11519230-11518923 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 1-390 |
| Cow position: | chr9:831871-831447 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-455 |
| Cow position: | chr9:3867942-3867463 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 176 |
| Conread position: | 1-462 |
| Cow position: | chr9:35657525-35658010 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 1-481 |
| Cow position: | chr9:28626470-28625962 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 1-482 |
| Cow position: | chr9:10314938-10315445 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 1-482 |
| Cow position: | chr9:12845967-12845474 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 2-482 |
| Cow position: | chr9:2800959-2800472 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 2-489 |
| Cow position: | chr9:3938232-3937739 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 204 |
| Conread position: | 6-482 |
| Cow position: | chr9:3725842-3726357 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 330 |
| Conread position: | 6-482 |
| Cow position: | chr9:5424610-5424105 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 7-472 |
| Cow position: | chr9:2202783-2203275 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 149 |
| Conread position: | 7-472 |
| Cow position: | chr9:52570238-52570720 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 7-485 |
| Cow position: | chr9:59425276-59425758 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 166, 36 |
| Conread position: | 9-201 |
| Cow position: | chr9:54994850-54995059 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 194 |
| Conread position: | 9-482 |
| Cow position: | chr9:6111384-6110918 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 18-460 |
| Cow position: | chr9:2052031-2052511 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 19-354 |
| Cow position: | chr9:20310147-20309788 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 142 |
| Conread position: | 25-470 |
| Cow position: | chr9:781212-780737 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 163 |
| Conread position: | 25-482 |
| Cow position: | chr9:45872943-45873428 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 26-471 |
| Cow position: | chr9:59443447-59443919 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 28-471 |
| Cow position: | chr9:10321414-10321878 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 21, 238 |
| Conread position: | 28-476 |
| Cow position: | chr9:6051448-6050976 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 192 |
| Conread position: | 28-476 |
| Cow position: | chr9:27034300-27034774 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 155 |
| Conread position: | 28-476 |
| Cow position: | chr9:29028637-29028152 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-481 |
| Cow position: | chr9:29629155-29628668 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr9:4532083-4532570 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr9:5003605-5004078 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 156 |
| Conread position: | 28-482 |
| Cow position: | chr9:30671962-30672447 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 199 |
| Conread position: | 28-482 |
| Cow position: | chr9:42309275-42309762 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 156 |
| Conread position: | 28-482 |
| Cow position: | chr9:59456007-59455519 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 28-482 |
| Cow position: | chr9:60278430-60277943 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 419 |
| Conread position: | 28-484 |
| Cow position: | chr9:15072107-15072595 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 417 |
| Conread position: | 28-484 |
| Cow position: | chr9:42568465-42568953 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 97 |
| Conread position: | 28-487 |
| Cow position: | chr9:31807132-31807618 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 31-482 |
| Cow position: | chr9:1996325-1995834 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 31-482 |
| Cow position: | chr9:16175363-16175846 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 34-481 |
| Cow position: | chr9:64118426-64118905 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 207 |
| Conread position: | 34-483 |
| Cow position: | chr9:39992527-39992999 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 70-466 |
| Cow position: | chr9:29327958-29328350 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 73-482 |
| Cow position: | chr9:9012760-9013186 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 74-482 |
| Cow position: | chr9:163839-163424 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 74-482 |
| Cow position: | chr9:3548519-3548093 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 177, 20 |
| Conread position: | 74-482 |
| Cow position: | chr9:9055415-9054986 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 74-482 |
| Cow position: | chr9:47001857-47002268 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 78-476 |
| Cow position: | chr9:25483528-25483946 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 85-480 |
| Cow position: | chr9:30485965-30486369 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 90-476 |
| Cow position: | chr9:3356306-3355919 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 93-480 |
| Cow position: | chr9:64158792-64159195 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 384 |
| Conread position: | 93-482 |
| Cow position: | chr9:25023632-25023222 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 93-482 |
| Cow position: | chr9:59174488-59174081 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 286 |
| Conread position: | 93-482 |
| Cow position: | chr9:59535767-59536174 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 93-483 |
| Cow position: | chr9:28021215-28021631 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 100-469 |
| Cow position: | chr9:9331048-9330659 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 157, 138 |
| Conread position: | 101-387 |
| Cow position: | chr9:23409891-23410188 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 136-482 |
| Cow position: | chr9:30826395-30826761 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 176-484 |
| Cow position: | chr9:4280216-4280537 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 93 |
| Conread position: | 251-452 |
| Cow position: | chr9:59510643-59510842 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 310-482 |
| Cow position: | chr9:54361342-54361511 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 311-482 |
| Cow position: | chr9:18067312-18067140 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 312-477 |
| Cow position: | chr9:32968876-32969043 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr9:1979887-1980058 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 312-482 |
| Cow position: | chr9:3394076-3393910 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 144 |
| Conread position: | 312-482 |
| Cow position: | chr9:34992301-34992472 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 313-482 |
| Cow position: | chr9:64018550-64018380 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 318-483 |
| Cow position: | chr9:34719884-34720053 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 326-482 |
| Cow position: | chr9:2475211-2475366 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 331-482 |
| Cow position: | chr9:37095122-37095274 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.