Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 350-540 |
| Cow position: | chr12:2835403-2835593 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 358-524 |
| Cow position: | chr12:15089525-15089693 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 359-495 |
| Cow position: | chr12:30745726-30745861 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 359-497 |
| Cow position: | chr12:14986759-14986894 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 359-501 |
| Cow position: | chr12:15122336-15122476 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-515 |
| Cow position: | chr12:33948914-33949066 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 359-517 |
| Cow position: | chr12:29731324-29731479 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 359-518 |
| Cow position: | chr12:12232890-12233049 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 359-526 |
| Cow position: | chr12:18582983-18582819 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 59 |
| Conread position: | 359-529 |
| Cow position: | chr12:2964057-2964229 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 359-530 |
| Cow position: | chr12:17269812-17269982 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 359-531 |
| Cow position: | chr12:22047931-22048109 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 359-535 |
| Cow position: | chr12:7884671-7884494 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 360-497 |
| Cow position: | chr12:37169935-37169802 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 360-509 |
| Cow position: | chr12:8710994-8711141 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 361-530 |
| Cow position: | chr12:583498-583320 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 361-538 |
| Cow position: | chr12:40435031-40434855 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 362-510 |
| Cow position: | chr12:29358050-29357906 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 362-726 |
| Cow position: | chr12:4008271-4007916 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 365-524 |
| Cow position: | chr12:20637520-20637363 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 9 |
| Conread position: | 368-556 |
| Cow position: | chr12:38165522-38165332 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 155, 54 |
| Conread position: | 520-722 |
| Cow position: | chr12:28598241-28598434 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 522-720 |
| Cow position: | chr12:36261668-36261855 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 524-716 |
| Cow position: | chr12:32169522-32169703 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 524-724 |
| Cow position: | chr12:7000620-7000418 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 12 |
| Conread position: | 524-727 |
| Cow position: | chr12:44013614-44013421 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-728 |
| Cow position: | chr12:25456391-25456590 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 524-734 |
| Cow position: | chr12:7110180-7110383 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-754 |
| Cow position: | chr12:43551239-43551022 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-760 |
| Cow position: | chr12:27430489-27430725 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 155, 12 |
| Conread position: | 525-726 |
| Cow position: | chr12:31883322-31883513 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 526-725 |
| Cow position: | chr12:18020842-18021044 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 527-704 |
| Cow position: | chr12:46464083-46463906 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 527-723 |
| Cow position: | chr12:19502443-19502250 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 86 |
| Conread position: | 527-725 |
| Cow position: | chr12:42879679-42879865 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 527-729 |
| Cow position: | chr12:6720312-6720518 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 527-734 |
| Cow position: | chr12:34148376-34148165 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 74, 196 |
| Conread position: | 527-741 |
| Cow position: | chr12:39486409-39486611 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 145, 34 |
| Conread position: | 529-725 |
| Cow position: | chr12:24437648-24437466 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 529-732 |
| Cow position: | chr12:30745703-30745889 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 529-733 |
| Cow position: | chr12:24663101-24663293 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 529-743 |
| Cow position: | chr12:29017891-29018109 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 530-707 |
| Cow position: | chr12:46120844-46120668 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 532-721 |
| Cow position: | chr12:24186500-24186315 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 534-720 |
| Cow position: | chr12:11090408-11090605 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 534-727 |
| Cow position: | chr12:4962626-4962822 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 81, 126 |
| Conread position: | 535-719 |
| Cow position: | chr12:4014440-4014262 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 535-728 |
| Cow position: | chr12:15832186-15832376 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 535-728 |
| Cow position: | chr12:32051503-32051689 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 541-724 |
| Cow position: | chr12:44622347-44622525 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 541-734 |
| Cow position: | chr12:29770580-29770378 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 98, 187 |
| Conread position: | 544-751 |
| Cow position: | chr12:3160255-3160057 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 552-725 |
| Cow position: | chr12:4790064-4789880 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 162 |
| Conread position: | 559-737 |
| Cow position: | chr12:34473608-34473430 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 32 |
Show alignments to all cow chromosomes.