Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 354-524 |
| Cow position: | chr15:13395597-13395418 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 358-497 |
| Cow position: | chr15:8354083-8353945 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 359-497 |
| Cow position: | chr15:840107-840243 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-497 |
| Cow position: | chr15:28099153-28099016 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 359-497 |
| Cow position: | chr15:46283876-46284012 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 359-522 |
| Cow position: | chr15:36422653-36422496 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 150, 54 |
| Conread position: | 359-523 |
| Cow position: | chr15:27657146-27656978 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 359-525 |
| Cow position: | chr15:22532293-22532124 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 359-527 |
| Cow position: | chr15:20566956-20566786 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 61 |
| Conread position: | 359-534 |
| Cow position: | chr15:17762950-17762779 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 169, 135 |
| Conread position: | 359-539 |
| Cow position: | chr15:848684-848505 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 360-497 |
| Cow position: | chr15:3695673-3695541 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 360-509 |
| Cow position: | chr15:53716474-53716325 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 360-522 |
| Cow position: | chr15:20391235-20391401 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 120 |
| Conread position: | 362-525 |
| Cow position: | chr15:24967832-24967676 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 139, 48 |
| Conread position: | 517-719 |
| Cow position: | chr15:8997375-8997181 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 522-734 |
| Cow position: | chr15:11658501-11658707 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 54 |
| Conread position: | 522-745 |
| Cow position: | chr15:40844548-40844756 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 523-708 |
| Cow position: | chr15:5657903-5657719 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 524-710 |
| Cow position: | chr15:23275610-23275433 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 524-718 |
| Cow position: | chr15:5726393-5726207 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-719 |
| Cow position: | chr15:19759129-19758937 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-720 |
| Cow position: | chr15:30047478-30047664 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 524-721 |
| Cow position: | chr15:10335823-10335622 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 524-729 |
| Cow position: | chr15:50333048-50332856 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-733 |
| Cow position: | chr15:29793125-29793323 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-734 |
| Cow position: | chr15:34207119-34207327 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 184, 15 |
| Conread position: | 524-743 |
| Cow position: | chr15:2141235-2141457 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 524-755 |
| Cow position: | chr15:36435273-36435056 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 526-751 |
| Cow position: | chr15:46059429-46059216 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 527-647 |
| Cow position: | chr15:25650347-25650466 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 527-724 |
| Cow position: | chr15:30470906-30471093 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 527-725 |
| Cow position: | chr15:41056138-41056324 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 527-727 |
| Cow position: | chr15:10442434-10442628 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 527-733 |
| Cow position: | chr15:42789082-42789295 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 527-734 |
| Cow position: | chr15:275719-275518 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 527-734 |
| Cow position: | chr15:25208691-25208883 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 529-721 |
| Cow position: | chr15:10456951-10457139 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 529-733 |
| Cow position: | chr15:26896630-26896822 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 529-750 |
| Cow position: | chr15:5523018-5522806 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 188, 17 |
| Conread position: | 530-728 |
| Cow position: | chr15:21520210-21520024 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 535-654 |
| Cow position: | chr15:1984354-1984239 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-700 |
| Cow position: | chr15:15232631-15232809 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 535-725 |
| Cow position: | chr15:2931510-2931686 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 535-729 |
| Cow position: | chr15:50660682-50660483 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 535-739 |
| Cow position: | chr15:14281607-14281406 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 102, 132 |
| Conread position: | 535-751 |
| Cow position: | chr15:12357675-12357466 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 536-747 |
| Cow position: | chr15:8642175-8641971 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 152, 79 |
| Conread position: | 537-731 |
| Cow position: | chr15:36713957-36714153 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 537-740 |
| Cow position: | chr15:52704557-52704352 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 537-747 |
| Cow position: | chr15:28788272-28788049 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 538-714 |
| Cow position: | chr15:18776696-18776875 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 544-723 |
| Cow position: | chr15:11912507-11912689 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 544-728 |
| Cow position: | chr15:27016198-27016390 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 544-728 |
| Cow position: | chr15:36846125-36846305 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 544-730 |
| Cow position: | chr15:24124782-24124603 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 547-718 |
| Cow position: | chr15:38877467-38877638 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 547-733 |
| Cow position: | chr15:27657151-27656978 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 552-733 |
| Cow position: | chr15:47058787-47058602 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 607-754 |
| Cow position: | chr15:12045538-12045685 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.