Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 339-527 |
| Cow position: | chr16:31011356-31011541 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 343-497 |
| Cow position: | chr16:52170088-52170239 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 354-535 |
| Cow position: | chr16:33704848-33705028 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 67 |
| Conread position: | 359-495 |
| Cow position: | chr16:48956847-48956983 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 127, 63 |
| Conread position: | 359-497 |
| Cow position: | chr16:8738114-8738253 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 359-497 |
| Cow position: | chr16:12320270-12320409 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 359-497 |
| Cow position: | chr16:12324504-12324640 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 359-497 |
| Cow position: | chr16:53451754-53451891 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 359-499 |
| Cow position: | chr16:20824526-20824665 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-509 |
| Cow position: | chr16:31117566-31117420 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-509 |
| Cow position: | chr16:42078799-42078649 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 140, 63 |
| Conread position: | 359-509 |
| Cow position: | chr16:49734097-49733946 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 359-513 |
| Cow position: | chr16:41696057-41696210 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 359-515 |
| Cow position: | chr16:39385540-39385690 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 359-522 |
| Cow position: | chr16:25170442-25170604 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-524 |
| Cow position: | chr16:29311572-29311741 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 359-527 |
| Cow position: | chr16:13306823-13306652 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 359-527 |
| Cow position: | chr16:30305766-30305602 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 359-527 |
| Cow position: | chr16:46433276-46433107 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 63 |
| Conread position: | 359-528 |
| Cow position: | chr16:21442562-21442389 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 359-529 |
| Cow position: | chr16:22984802-22984969 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 359-534 |
| Cow position: | chr16:45678027-45678199 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-538 |
| Cow position: | chr16:23881162-23880991 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 360-497 |
| Cow position: | chr16:33646065-33646201 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 360-499 |
| Cow position: | chr16:7723751-7723887 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 360-541 |
| Cow position: | chr16:11134931-11134754 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 361-538 |
| Cow position: | chr16:31149429-31149607 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 362-497 |
| Cow position: | chr16:51500981-51501114 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 362-527 |
| Cow position: | chr16:38708785-38708619 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 362-650 |
| Cow position: | chr16:17745888-17746181 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 363-508 |
| Cow position: | chr16:41653026-41653169 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 513-721 |
| Cow position: | chr16:51915579-51915791 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 515-754 |
| Cow position: | chr16:17460181-17460413 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 202, 13 |
| Conread position: | 521-724 |
| Cow position: | chr16:3304040-3304240 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 7, 85 |
| Conread position: | 521-728 |
| Cow position: | chr16:48448742-48448949 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 522-731 |
| Cow position: | chr16:22842037-22841836 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 522-739 |
| Cow position: | chr16:19003515-19003294 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 524-720 |
| Cow position: | chr16:9987046-9986856 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-720 |
| Cow position: | chr16:11390263-11390074 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-726 |
| Cow position: | chr16:47632881-47633080 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 524-732 |
| Cow position: | chr16:12091641-12091440 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 524-733 |
| Cow position: | chr16:33871669-33871874 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 524-733 |
| Cow position: | chr16:56670897-56670697 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-740 |
| Cow position: | chr16:47820590-47820794 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 146, 5 |
| Conread position: | 527-720 |
| Cow position: | chr16:33198415-33198233 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 527-721 |
| Cow position: | chr16:7075939-7076121 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 527-728 |
| Cow position: | chr16:21761946-21761740 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 108, 103 |
| Conread position: | 527-728 |
| Cow position: | chr16:29608533-29608730 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 527-730 |
| Cow position: | chr16:45122059-45122252 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 527-732 |
| Cow position: | chr16:24142934-24142740 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 527-733 |
| Cow position: | chr16:31880739-31880538 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 198, 16 |
| Conread position: | 527-734 |
| Cow position: | chr16:9973475-9973268 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 527-735 |
| Cow position: | chr16:11422324-11422530 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 527-736 |
| Cow position: | chr16:17945545-17945757 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 527-754 |
| Cow position: | chr16:29527853-29528075 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 215, 73 |
| Conread position: | 528-729 |
| Cow position: | chr16:16025461-16025653 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 530-720 |
| Cow position: | chr16:9905117-9905296 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 535-714 |
| Cow position: | chr16:53089319-53089139 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 65 |
| Conread position: | 535-719 |
| Cow position: | chr16:33054449-33054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 112, 80 |
| Conread position: | 535-725 |
| Cow position: | chr16:30174499-30174316 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 535-726 |
| Cow position: | chr16:42977499-42977680 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 535-734 |
| Cow position: | chr16:8953651-8953460 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 536-720 |
| Cow position: | chr16:24826106-24826291 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 107, 141 |
| Conread position: | 539-770 |
| Cow position: | chr16:11922992-11922752 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 544-725 |
| Cow position: | chr16:49174325-49174501 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 544-727 |
| Cow position: | chr16:17135765-17135940 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 563-722 |
| Cow position: | chr16:20749252-20749413 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 632-748 |
| Cow position: | chr16:7727928-7727812 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.