Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 358-505 |
| Cow position: | chr17:5027375-5027230 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 359-496 |
| Cow position: | chr17:25901289-25901433 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-508 |
| Cow position: | chr17:1634403-1634255 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-509 |
| Cow position: | chr17:9824758-9824906 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 359-509 |
| Cow position: | chr17:25473191-25473042 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-521 |
| Cow position: | chr17:32333002-32332837 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 359-524 |
| Cow position: | chr17:21039646-21039811 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-524 |
| Cow position: | chr17:21466174-21466004 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 359-525 |
| Cow position: | chr17:29995347-29995182 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 359-527 |
| Cow position: | chr17:21718908-21718739 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 142, 62 |
| Conread position: | 359-528 |
| Cow position: | chr17:24824331-24824503 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 128 |
| Conread position: | 359-530 |
| Cow position: | chr17:19544143-19543974 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 359-530 |
| Cow position: | chr17:27606606-27606775 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 359-530 |
| Cow position: | chr17:32989565-32989730 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-530 |
| Cow position: | chr17:32993535-32993369 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-532 |
| Cow position: | chr17:17035038-17035205 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-532 |
| Cow position: | chr17:20881720-20881554 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-533 |
| Cow position: | chr17:34790975-34790800 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 140, 63 |
| Conread position: | 359-537 |
| Cow position: | chr17:7959270-7959447 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 359-546 |
| Cow position: | chr17:9260523-9260337 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 162 |
| Conread position: | 360-497 |
| Cow position: | chr17:908830-908965 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 360-497 |
| Cow position: | chr17:946447-946582 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 360-499 |
| Cow position: | chr17:34806577-34806435 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 360-509 |
| Cow position: | chr17:20836180-20836329 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 60 |
| Conread position: | 360-509 |
| Cow position: | chr17:43315198-43315051 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 11 |
| Conread position: | 360-517 |
| Cow position: | chr17:21114864-21114708 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 360-524 |
| Cow position: | chr17:32419026-32418860 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 139, 62 |
| Conread position: | 361-497 |
| Cow position: | chr17:21676981-21677117 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 362-509 |
| Cow position: | chr17:26575131-26574984 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 362-524 |
| Cow position: | chr17:24587716-24587879 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 60 |
| Conread position: | 365-558 |
| Cow position: | chr17:3467847-3468038 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 368-525 |
| Cow position: | chr17:20783096-20782943 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 504-639 |
| Cow position: | chr17:20881771-20881635 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 510-733 |
| Cow position: | chr17:9854020-9854235 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 512-704 |
| Cow position: | chr17:21335518-21335327 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 515-727 |
| Cow position: | chr17:31480986-31480783 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 520-718 |
| Cow position: | chr17:26231012-26231203 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 524-727 |
| Cow position: | chr17:9078159-9077966 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 524-735 |
| Cow position: | chr17:31563627-31563429 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 524-750 |
| Cow position: | chr17:27058495-27058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 222, 12 |
| Conread position: | 527-716 |
| Cow position: | chr17:25901264-25901444 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 527-720 |
| Cow position: | chr17:15340688-15340485 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 172 |
| Conread position: | 527-721 |
| Cow position: | chr17:21758077-21757878 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 167 |
| Conread position: | 527-722 |
| Cow position: | chr17:3388890-3389076 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 527-722 |
| Cow position: | chr17:4225435-4225244 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 527-723 |
| Cow position: | chr17:7810691-7810503 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 190, 88 |
| Conread position: | 527-724 |
| Cow position: | chr17:42697358-42697571 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 527-727 |
| Cow position: | chr17:3153510-3153321 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 527-728 |
| Cow position: | chr17:4105930-4105744 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 527-728 |
| Cow position: | chr17:4121666-4121479 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 527-728 |
| Cow position: | chr17:32138360-32138168 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 527-733 |
| Cow position: | chr17:24824306-24824499 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 88, 106 |
| Conread position: | 527-734 |
| Cow position: | chr17:21466199-21466004 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 527-735 |
| Cow position: | chr17:40331831-40332034 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 527-736 |
| Cow position: | chr17:21325396-21325600 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 527-741 |
| Cow position: | chr17:9713278-9713060 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 527-749 |
| Cow position: | chr17:30728568-30728778 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 170, 86 |
| Conread position: | 529-720 |
| Cow position: | chr17:24554062-24554262 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 114, 94 |
| Conread position: | 530-746 |
| Cow position: | chr17:24895140-24895343 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 534-727 |
| Cow position: | chr17:13297451-13297632 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 535-718 |
| Cow position: | chr17:30737515-30737688 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-726 |
| Cow position: | chr17:3097584-3097395 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 535-727 |
| Cow position: | chr17:25490989-25490795 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 535-734 |
| Cow position: | chr17:8663576-8663761 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 535-742 |
| Cow position: | chr17:21738802-21738603 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 535-751 |
| Cow position: | chr17:25139335-25139546 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 536-721 |
| Cow position: | chr17:1364669-1364851 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 536-742 |
| Cow position: | chr17:21788586-21788382 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 537-757 |
| Cow position: | chr17:24750988-24751189 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 544-720 |
| Cow position: | chr17:21372573-21372748 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 549-724 |
| Cow position: | chr17:25352283-25352450 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 64 |
| Conread position: | 551-735 |
| Cow position: | chr17:4472447-4472258 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 625-725 |
| Cow position: | chr17:25718288-25718388 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.