Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 345-535 |
| Cow position: | chr18:56176927-56177109 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 66 |
| Conread position: | 355-618 |
| Cow position: | chr18:52406074-52406325 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 358-528 |
| Cow position: | chr18:29648798-29648965 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 140, 41 |
| Conread position: | 359-497 |
| Cow position: | chr18:306704-306564 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 359-497 |
| Cow position: | chr18:9365936-9366074 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-497 |
| Cow position: | chr18:49440856-49440995 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 359-497 |
| Cow position: | chr18:49603028-49602890 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 359-499 |
| Cow position: | chr18:50004690-50004552 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-515 |
| Cow position: | chr18:4489893-4489728 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 359-518 |
| Cow position: | chr18:47419814-47419969 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 139, 40 |
| Conread position: | 359-523 |
| Cow position: | chr18:35535131-35534972 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-530 |
| Cow position: | chr18:1571222-1571051 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 359-530 |
| Cow position: | chr18:4907162-4907329 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 359-530 |
| Cow position: | chr18:50632427-50632262 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 359-545 |
| Cow position: | chr18:15517156-15516979 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 360-505 |
| Cow position: | chr18:25598216-25598072 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 139, 60 |
| Conread position: | 360-509 |
| Cow position: | chr18:11779669-11779819 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 140, 62 |
| Conread position: | 360-534 |
| Cow position: | chr18:4485615-4485786 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 76 |
| Conread position: | 361-522 |
| Cow position: | chr18:22790071-22789912 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 361-524 |
| Cow position: | chr18:50276226-50276063 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 361-542 |
| Cow position: | chr18:42432072-42431899 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 362-509 |
| Cow position: | chr18:9010726-9010870 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 137, 60 |
| Conread position: | 363-509 |
| Cow position: | chr18:11691390-11691241 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 420-686 |
| Cow position: | chr18:47966811-47966550 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 506-728 |
| Cow position: | chr18:33896448-33896240 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 522-726 |
| Cow position: | chr18:7952188-7952382 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 523-730 |
| Cow position: | chr18:52413952-52414143 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 91 |
| Conread position: | 524-716 |
| Cow position: | chr18:50612543-50612354 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-723 |
| Cow position: | chr18:4489920-4489732 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-727 |
| Cow position: | chr18:24342831-24343036 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 155, 5 |
| Conread position: | 524-728 |
| Cow position: | chr18:5701237-5701438 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 524-731 |
| Cow position: | chr18:42751614-42751411 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 524-735 |
| Cow position: | chr18:27388572-27388777 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 187, 57 |
| Conread position: | 526-732 |
| Cow position: | chr18:1549559-1549362 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 527-719 |
| Cow position: | chr18:52649357-52649174 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 527-726 |
| Cow position: | chr18:53038820-53039021 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 91 |
| Conread position: | 527-727 |
| Cow position: | chr18:16378913-16379116 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 527-733 |
| Cow position: | chr18:21081901-21081701 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 527-733 |
| Cow position: | chr18:39875269-39875066 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 527-738 |
| Cow position: | chr18:3085526-3085323 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 527-746 |
| Cow position: | chr18:17391003-17390797 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 208, 30 |
| Conread position: | 527-753 |
| Cow position: | chr18:4535034-4534807 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 527-754 |
| Cow position: | chr18:12270492-12270713 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 205, 12 |
| Conread position: | 528-736 |
| Cow position: | chr18:41724827-41724633 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 529-734 |
| Cow position: | chr18:6130060-6129853 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 530-732 |
| Cow position: | chr18:11672036-11672231 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 535-708 |
| Cow position: | chr18:42747586-42747752 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 535-726 |
| Cow position: | chr18:18320562-18320376 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 535-727 |
| Cow position: | chr18:37023552-37023364 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-729 |
| Cow position: | chr18:42978647-42978457 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-732 |
| Cow position: | chr18:11691410-11691228 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 535-735 |
| Cow position: | chr18:1954591-1954399 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 535-737 |
| Cow position: | chr18:22790090-22789907 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 536-728 |
| Cow position: | chr18:23921703-23921520 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 536-735 |
| Cow position: | chr18:51178729-51178531 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 180, 79 |
| Conread position: | 539-725 |
| Cow position: | chr18:3158592-3158412 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 540-726 |
| Cow position: | chr18:36230723-36230534 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 541-759 |
| Cow position: | chr18:29402192-29402407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 544-713 |
| Cow position: | chr18:49841285-49841442 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 544-731 |
| Cow position: | chr18:41025122-41024941 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 551-719 |
| Cow position: | chr18:37308462-37308628 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 553-732 |
| Cow position: | chr18:8390206-8390389 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 561-720 |
| Cow position: | chr18:52402953-52402799 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 568-724 |
| Cow position: | chr18:24705462-24705624 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 614-742 |
| Cow position: | chr18:41257857-41257729 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.