Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 1-282 |
| Cow position: | chr23:35702222-35702494 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 359-495 |
| Cow position: | chr23:23104437-23104304 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-497 |
| Cow position: | chr23:1585348-1585211 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-497 |
| Cow position: | chr23:17597477-17597610 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 359-497 |
| Cow position: | chr23:20725637-20725503 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-499 |
| Cow position: | chr23:41477929-41478066 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-509 |
| Cow position: | chr23:24718751-24718602 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-509 |
| Cow position: | chr23:24966412-24966260 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 359-510 |
| Cow position: | chr23:22586930-22587079 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 359-518 |
| Cow position: | chr23:16664351-16664193 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-533 |
| Cow position: | chr23:8698471-8698655 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 359-534 |
| Cow position: | chr23:39049388-39049216 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 360-497 |
| Cow position: | chr23:36022737-36022604 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 360-509 |
| Cow position: | chr23:24809385-24809236 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 141, 62 |
| Conread position: | 360-527 |
| Cow position: | chr23:9131909-9131741 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 139, 48 |
| Conread position: | 362-525 |
| Cow position: | chr23:534281-534446 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 58 |
| Conread position: | 500-716 |
| Cow position: | chr23:23114053-23114278 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 518-722 |
| Cow position: | chr23:5451335-5451526 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 519-722 |
| Cow position: | chr23:27030310-27030510 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 520-735 |
| Cow position: | chr23:18679153-18679364 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 523-725 |
| Cow position: | chr23:3431093-3431295 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 523-753 |
| Cow position: | chr23:4416265-4416050 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 524-722 |
| Cow position: | chr23:12334234-12334426 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-723 |
| Cow position: | chr23:38455155-38454958 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 524-725 |
| Cow position: | chr23:11315011-11314809 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 524-726 |
| Cow position: | chr23:3835571-3835373 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 524-727 |
| Cow position: | chr23:20604695-20604478 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 524-728 |
| Cow position: | chr23:204304-204500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 178, 12 |
| Conread position: | 524-734 |
| Cow position: | chr23:13674008-13673798 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 524-746 |
| Cow position: | chr23:344163-343946 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 193, 12 |
| Conread position: | 525-734 |
| Cow position: | chr23:5449728-5449935 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 527-628 |
| Cow position: | chr23:16881137-16881036 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-629 |
| Cow position: | chr23:5785870-5785970 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 527-719 |
| Cow position: | chr23:1290323-1290507 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 527-719 |
| Cow position: | chr23:3282096-3281909 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 527-724 |
| Cow position: | chr23:1760820-1760627 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 527-724 |
| Cow position: | chr23:3408885-3408680 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 527-724 |
| Cow position: | chr23:3814255-3814055 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 527-724 |
| Cow position: | chr23:18354675-18354881 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 527-724 |
| Cow position: | chr23:21502605-21502399 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 117, 171 |
| Conread position: | 527-725 |
| Cow position: | chr23:40637284-40637471 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 527-726 |
| Cow position: | chr23:2487966-2487760 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 87, 149 |
| Conread position: | 527-726 |
| Cow position: | chr23:5426459-5426645 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 527-726 |
| Cow position: | chr23:5609054-5608845 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 527-728 |
| Cow position: | chr23:26986245-26986062 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 527-732 |
| Cow position: | chr23:22238796-22238606 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 527-735 |
| Cow position: | chr23:24926840-24927043 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 527-736 |
| Cow position: | chr23:20744567-20744362 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 195, 65 |
| Conread position: | 527-741 |
| Cow position: | chr23:14524012-14524219 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 527-743 |
| Cow position: | chr23:8698446-8698650 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 529-729 |
| Cow position: | chr23:36018178-36018376 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 529-732 |
| Cow position: | chr23:28798103-28798304 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 530-720 |
| Cow position: | chr23:22298010-22297828 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 535-682 |
| Cow position: | chr23:35199374-35199522 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 143 |
| Conread position: | 535-712 |
| Cow position: | chr23:18874381-18874209 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 535-728 |
| Cow position: | chr23:665753-665570 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 535-735 |
| Cow position: | chr23:3967526-3967336 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 184, 80 |
| Conread position: | 540-721 |
| Cow position: | chr23:19453946-19453769 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 544-732 |
| Cow position: | chr23:19739523-19739348 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 552-735 |
| Cow position: | chr23:21413270-21413088 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 553-735 |
| Cow position: | chr23:22105612-22105801 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 632-741 |
| Cow position: | chr23:1429719-1429610 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 759-1181 |
| Cow position: | chr23:35702572-35702996 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 45 |
Show alignments to all cow chromosomes.