Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 358-497 |
| Cow position: | chr4:10558576-10558713 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 358-524 |
| Cow position: | chr4:22215471-22215312 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 359-495 |
| Cow position: | chr4:38209934-38209800 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-497 |
| Cow position: | chr4:37915295-37915161 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-497 |
| Cow position: | chr4:52831976-52831838 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-501 |
| Cow position: | chr4:60621555-60621414 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 359-502 |
| Cow position: | chr4:21874216-21874360 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 359-515 |
| Cow position: | chr4:17186310-17186153 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 359-518 |
| Cow position: | chr4:68590812-68590967 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-521 |
| Cow position: | chr4:61524473-61524631 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 359-522 |
| Cow position: | chr4:65463468-65463309 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 145, 63 |
| Conread position: | 359-525 |
| Cow position: | chr4:56395553-56395726 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 359-526 |
| Cow position: | chr4:59002099-59001927 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 359-526 |
| Cow position: | chr4:63293500-63293662 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 359-527 |
| Cow position: | chr4:27657017-27657179 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-528 |
| Cow position: | chr4:19119058-19119229 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 140, 164 |
| Conread position: | 359-528 |
| Cow position: | chr4:37991630-37991798 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 76 |
| Conread position: | 359-530 |
| Cow position: | chr4:5250228-5250402 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 359-530 |
| Cow position: | chr4:30943995-30944165 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-530 |
| Cow position: | chr4:40414587-40414420 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 359-530 |
| Cow position: | chr4:51083297-51083128 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 359-532 |
| Cow position: | chr4:4319111-4318941 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 359-533 |
| Cow position: | chr4:35982040-35982212 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 142, 28 |
| Conread position: | 359-540 |
| Cow position: | chr4:42374115-42373936 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-543 |
| Cow position: | chr4:62821015-62820831 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 359-545 |
| Cow position: | chr4:4085070-4084879 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 360-497 |
| Cow position: | chr4:48486036-48486173 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-526 |
| Cow position: | chr4:8182595-8182427 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 360-530 |
| Cow position: | chr4:3519463-3519627 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 360-556 |
| Cow position: | chr4:28660509-28660310 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 171 |
| Conread position: | 362-515 |
| Cow position: | chr4:19578431-19578579 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 139, 58 |
| Conread position: | 362-525 |
| Cow position: | chr4:42608782-42608948 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 362-541 |
| Cow position: | chr4:33838759-33838579 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 139, 58 |
| Conread position: | 515-738 |
| Cow position: | chr4:54937086-54937304 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 198, 21 |
| Conread position: | 519-732 |
| Cow position: | chr4:54927433-54927226 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 519-746 |
| Cow position: | chr4:28660542-28660328 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 224, 10 |
| Conread position: | 522-731 |
| Cow position: | chr4:5132345-5132547 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 524-720 |
| Cow position: | chr4:34630912-34631098 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-725 |
| Cow position: | chr4:1236859-1236660 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 168, 5 |
| Conread position: | 524-727 |
| Cow position: | chr4:45636180-45636370 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 524-729 |
| Cow position: | chr4:53169581-53169373 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 524-731 |
| Cow position: | chr4:12441909-12442111 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 524-732 |
| Cow position: | chr4:13241639-13241842 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 524-732 |
| Cow position: | chr4:45909963-45909756 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 524-733 |
| Cow position: | chr4:45483812-45484008 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-734 |
| Cow position: | chr4:19431682-19431485 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-734 |
| Cow position: | chr4:54191103-54191307 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 526-712 |
| Cow position: | chr4:48381396-48381573 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 527-653 |
| Cow position: | chr4:19323990-19324116 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-723 |
| Cow position: | chr4:11871906-11871718 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 119 |
| Conread position: | 527-727 |
| Cow position: | chr4:29318060-29317870 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 119 |
| Conread position: | 527-727 |
| Cow position: | chr4:46435340-46435532 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 527-727 |
| Cow position: | chr4:65753235-65753040 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 527-728 |
| Cow position: | chr4:19700114-19700306 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 527-731 |
| Cow position: | chr4:3687938-3688131 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 527-746 |
| Cow position: | chr4:8947412-8947639 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 527-753 |
| Cow position: | chr4:10915820-10915610 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 528-723 |
| Cow position: | chr4:62794347-62794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 134, 86 |
| Conread position: | 529-725 |
| Cow position: | chr4:26830725-26830914 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 529-731 |
| Cow position: | chr4:34641708-34641520 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 188, 63 |
| Conread position: | 529-734 |
| Cow position: | chr4:39010067-39010258 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 529-738 |
| Cow position: | chr4:2525758-2525552 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 190, 65 |
| Conread position: | 532-728 |
| Cow position: | chr4:65919629-65919817 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 535-708 |
| Cow position: | chr4:30845395-30845564 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 535-733 |
| Cow position: | chr4:19542156-19542354 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-733 |
| Cow position: | chr4:62020379-62020181 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 535-734 |
| Cow position: | chr4:48902601-48902407 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-757 |
| Cow position: | chr4:48321498-48321277 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 112, 38 |
| Conread position: | 536-732 |
| Cow position: | chr4:19584728-19584917 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 152, 79 |
| Conread position: | 540-734 |
| Cow position: | chr4:20115987-20115806 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 540-771 |
| Cow position: | chr4:23809789-23809560 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 544-689 |
| Cow position: | chr4:28570130-28570272 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 552-725 |
| Cow position: | chr4:15462210-15462031 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 552-732 |
| Cow position: | chr4:20315472-20315292 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 78 |
| Conread position: | 576-731 |
| Cow position: | chr4:10962531-10962382 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 587-741 |
| Cow position: | chr4:23880613-23880459 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 618-728 |
| Cow position: | chr4:46656222-46656333 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 627-723 |
| Cow position: | chr4:19324118-19324214 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.