Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8032P24.3 |
| Conread position: | 294-538 |
| Cow position: | chrX:42381103-42380853 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 314-527 |
| Cow position: | chrX:34505020-34504810 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 335-497 |
| Cow position: | chrX:37781060-37780898 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 89 |
| Conread position: | 355-497 |
| Cow position: | chrX:22482620-22482475 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 358-518 |
| Cow position: | chrX:31480042-31480202 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 143, 63 |
| Conread position: | 359-479 |
| Cow position: | chrX:24633770-24633890 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-495 |
| Cow position: | chrX:6640502-6640636 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 359-497 |
| Cow position: | chrX:1466237-1466377 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 63 |
| Conread position: | 359-497 |
| Cow position: | chrX:6480521-6480381 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 359-497 |
| Cow position: | chrX:31436549-31436683 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-508 |
| Cow position: | chrX:29050322-29050468 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 142, 52 |
| Conread position: | 359-509 |
| Cow position: | chrX:9252088-9251936 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 359-509 |
| Cow position: | chrX:35029851-35029709 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 359-520 |
| Cow position: | chrX:9201623-9201780 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 61 |
| Conread position: | 359-521 |
| Cow position: | chrX:39290434-39290597 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 359-522 |
| Cow position: | chrX:43059176-43059016 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 140, 63 |
| Conread position: | 359-524 |
| Cow position: | chrX:34411921-34412092 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 359-524 |
| Cow position: | chrX:34836989-34836833 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 359-525 |
| Cow position: | chrX:19394628-19394798 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 359-528 |
| Cow position: | chrX:34991439-34991607 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 359-530 |
| Cow position: | chrX:27668883-27668714 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 145, 61 |
| Conread position: | 359-533 |
| Cow position: | chrX:16836214-16836043 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 359-534 |
| Cow position: | chrX:11656156-11656329 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 359-544 |
| Cow position: | chrX:14135753-14135935 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 359-569 |
| Cow position: | chrX:20957313-20957523 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 168 |
| Conread position: | 359-744 |
| Cow position: | chrX:4486949-4486550 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 360-492 |
| Cow position: | chrX:17795057-17795189 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-497 |
| Cow position: | chrX:40685252-40685115 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-502 |
| Cow position: | chrX:4750256-4750119 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 360-533 |
| Cow position: | chrX:12972759-12972926 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 360-543 |
| Cow position: | chrX:2936033-2936213 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 361-497 |
| Cow position: | chrX:34314101-34314235 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 362-509 |
| Cow position: | chrX:10252122-10251975 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 139, 68 |
| Conread position: | 363-497 |
| Cow position: | chrX:31279845-31279713 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 520-751 |
| Cow position: | chrX:40480825-40480587 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 521-720 |
| Cow position: | chrX:41991091-41990895 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 521-724 |
| Cow position: | chrX:43014630-43014428 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 523-747 |
| Cow position: | chrX:32821075-32821290 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 524-704 |
| Cow position: | chrX:36848529-36848345 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 524-720 |
| Cow position: | chrX:31983537-31983350 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-722 |
| Cow position: | chrX:27393978-27393788 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-722 |
| Cow position: | chrX:40452036-40451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 524-723 |
| Cow position: | chrX:37062537-37062336 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 524-723 |
| Cow position: | chrX:40648942-40649133 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 524-725 |
| Cow position: | chrX:38301857-38302047 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 524-743 |
| Cow position: | chrX:35409800-35410003 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 526-753 |
| Cow position: | chrX:34411895-34412111 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 200, 87 |
| Conread position: | 527-718 |
| Cow position: | chrX:31312079-31312282 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 527-720 |
| Cow position: | chrX:40531993-40531798 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 527-720 |
| Cow position: | chrX:42381062-42380884 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 527-725 |
| Cow position: | chrX:40046525-40046335 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 173, 16 |
| Conread position: | 527-725 |
| Cow position: | chrX:46079135-46079321 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 527-728 |
| Cow position: | chrX:38853248-38853447 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 527-730 |
| Cow position: | chrX:616209-616001 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 527-730 |
| Cow position: | chrX:7695801-7696001 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 527-740 |
| Cow position: | chrX:30337904-30337706 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 527-740 |
| Cow position: | chrX:47345377-47345579 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 206, 71 |
| Conread position: | 527-745 |
| Cow position: | chrX:34508594-34508819 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 92, 143 |
| Conread position: | 527-746 |
| Cow position: | chrX:6599732-6599520 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 132, 88 |
| Conread position: | 528-726 |
| Cow position: | chrX:40557628-40557424 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 530-740 |
| Cow position: | chrX:35985871-35986063 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 534-733 |
| Cow position: | chrX:21910970-21910772 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 192, 10 |
| Conread position: | 535-704 |
| Cow position: | chrX:6690202-6690031 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 156 |
| Conread position: | 535-715 |
| Cow position: | chrX:40269549-40269731 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 535-722 |
| Cow position: | chrX:40108460-40108283 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-727 |
| Cow position: | chrX:40035382-40035207 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 535-730 |
| Cow position: | chrX:43012095-43011905 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 535-754 |
| Cow position: | chrX:25282980-25282748 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 536-730 |
| Cow position: | chrX:26881506-26881324 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 537-722 |
| Cow position: | chrX:5017361-5017186 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 539-728 |
| Cow position: | chrX:31829399-31829206 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 544-723 |
| Cow position: | chrX:16348504-16348323 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 544-725 |
| Cow position: | chrX:23498613-23498430 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 146 |
| Conread position: | 544-728 |
| Cow position: | chrX:43129028-43128849 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 544-729 |
| Cow position: | chrX:23182916-23182730 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 552-719 |
| Cow position: | chrX:13785147-13784985 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 576-745 |
| Cow position: | chrX:48044134-48043970 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 590-732 |
| Cow position: | chrX:6544342-6544485 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 601-730 |
| Cow position: | chrX:33865184-33865059 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 607-728 |
| Cow position: | chrX:8759737-8759859 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 609-741 |
| Cow position: | chrX:1996333-1996203 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.