Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8033B19.5 |
| Conread position: | 25-293 |
| Cow position: | chr11:30708717-30708457 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 41-300 |
| Cow position: | chr11:34646794-34646532 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 45-294 |
| Cow position: | chr11:32254020-32254268 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 47-293 |
| Cow position: | chr11:13592931-13592686 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 93 |
| Conread position: | 55-301 |
| Cow position: | chr11:2917410-2917646 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 61 |
| Conread position: | 300-474 |
| Cow position: | chr11:23249116-23249288 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 301-431 |
| Cow position: | chr11:17281126-17281259 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 301-431 |
| Cow position: | chr11:47758925-47759060 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 301-439 |
| Cow position: | chr11:34018356-34018217 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 301-465 |
| Cow position: | chr11:67155031-67154865 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 301-472 |
| Cow position: | chr11:11989482-11989314 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 301-473 |
| Cow position: | chr11:26069689-26069865 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-474 |
| Cow position: | chr11:35894553-35894725 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 301-475 |
| Cow position: | chr11:44581990-44582163 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-476 |
| Cow position: | chr11:1488819-1488994 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-476 |
| Cow position: | chr11:49039030-49039203 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 301-476 |
| Cow position: | chr11:87142934-87142759 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-479 |
| Cow position: | chr11:33976724-33976900 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-482 |
| Cow position: | chr11:31863437-31863256 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-484 |
| Cow position: | chr11:49552799-49552983 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-485 |
| Cow position: | chr11:7117764-7117579 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-487 |
| Cow position: | chr11:29231627-29231814 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 302-475 |
| Cow position: | chr11:20732883-20733056 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 302-475 |
| Cow position: | chr11:63653982-63654155 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 302-476 |
| Cow position: | chr11:80472938-80473113 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 147 |
| Conread position: | 303-435 |
| Cow position: | chr11:4062561-4062689 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-467 |
| Cow position: | chr11:40329635-40329797 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-472 |
| Cow position: | chr11:19101145-19101312 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-472 |
| Cow position: | chr11:53285824-53285987 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-473 |
| Cow position: | chr11:24394661-24394494 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 163, 28 |
| Conread position: | 303-474 |
| Cow position: | chr11:30253574-30253407 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-474 |
| Cow position: | chr11:39805080-39804902 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 303-475 |
| Cow position: | chr11:3494338-3494168 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:4026263-4026433 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 164, 94 |
| Conread position: | 303-475 |
| Cow position: | chr11:9733334-9733502 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:10056849-10056677 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 92 |
| Conread position: | 303-475 |
| Cow position: | chr11:10848799-10848631 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:11590315-11590146 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 303-475 |
| Cow position: | chr11:12357053-12357223 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:12372488-12372658 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:17106333-17106503 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:17118994-17119165 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 303-475 |
| Cow position: | chr11:17547506-17547336 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:19062728-19062898 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:28228419-28228589 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:38834099-38834269 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:41169347-41169517 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:43513276-43513445 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:44517517-44517685 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:57626703-57626873 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 303-475 |
| Cow position: | chr11:67451841-67451671 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:67845223-67845393 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 303-475 |
| Cow position: | chr11:71330948-71330778 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:72309691-72309859 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:73134651-73134482 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 303-475 |
| Cow position: | chr11:85392485-85392655 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-476 |
| Cow position: | chr11:21475469-21475298 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-479 |
| Cow position: | chr11:61399756-61399933 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 90 |
| Conread position: | 303-481 |
| Cow position: | chr11:27668646-27668822 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-483 |
| Cow position: | chr11:37802411-37802235 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-484 |
| Cow position: | chr11:32079439-32079618 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-485 |
| Cow position: | chr11:29667249-29667431 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 170, 91 |
| Conread position: | 303-487 |
| Cow position: | chr11:32453180-32452998 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr11:41234363-41234181 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr11:49238611-49238796 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 156, 70 |
| Conread position: | 303-487 |
| Cow position: | chr11:50836319-50836501 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr11:53430687-53430871 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 152, 91 |
| Conread position: | 303-487 |
| Cow position: | chr11:64356149-64355967 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 151, 84 |
| Conread position: | 303-487 |
| Cow position: | chr11:86876535-86876717 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 304-475 |
| Cow position: | chr11:4034046-4034214 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 304-487 |
| Cow position: | chr11:66730428-66730242 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 310-475 |
| Cow position: | chr11:23881363-23881206 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 319-476 |
| Cow position: | chr11:23126331-23126486 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 322-475 |
| Cow position: | chr11:26123597-26123748 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 322-487 |
| Cow position: | chr11:52808682-52808514 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 116, 71 |
| Conread position: | 332-475 |
| Cow position: | chr11:9215189-9215330 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 341-473 |
| Cow position: | chr11:26073653-26073787 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 111, 53 |
| Conread position: | 342-488 |
| Cow position: | chr11:15986560-15986417 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 343-487 |
| Cow position: | chr11:29612684-29612828 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 349-452 |
| Cow position: | chr11:25865542-25865644 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.