Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8033B19.5 |
| Conread position: | 28-301 |
| Cow position: | chr12:35310494-35310764 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 43-292 |
| Cow position: | chr12:20404324-20404076 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 155, 106 |
| Conread position: | 44-285 |
| Cow position: | chr12:17478866-17479105 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 154, 117 |
| Conread position: | 52-293 |
| Cow position: | chr12:10942458-10942215 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 54-284 |
| Cow position: | chr12:36261856-36261627 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 55-297 |
| Cow position: | chr12:42602076-42602319 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 143, 113 |
| Conread position: | 55-301 |
| Cow position: | chr12:18518833-18518593 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 144, 92 |
| Conread position: | 299-487 |
| Cow position: | chr12:35346172-35345981 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 301-411 |
| Cow position: | chr12:11581641-11581530 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 301-435 |
| Cow position: | chr12:30685378-30685245 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 301-442 |
| Cow position: | chr12:15950167-15950309 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-465 |
| Cow position: | chr12:1776326-1776491 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 301-472 |
| Cow position: | chr12:19870528-19870357 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-472 |
| Cow position: | chr12:22204072-22204243 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 301-475 |
| Cow position: | chr12:21943383-21943209 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 301-475 |
| Cow position: | chr12:48471247-48471418 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-486 |
| Cow position: | chr12:32677356-32677541 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 301-487 |
| Cow position: | chr12:21092087-21092274 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 302-475 |
| Cow position: | chr12:21429647-21429474 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 303-437 |
| Cow position: | chr12:25261879-25262010 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 88 |
| Conread position: | 303-457 |
| Cow position: | chr12:32655186-32655035 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-464 |
| Cow position: | chr12:21210300-21210141 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-471 |
| Cow position: | chr12:21252951-21253116 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:6405003-6405170 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:8676454-8676624 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:20461594-20461764 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:20996451-20996620 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:22568119-22568287 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:24433449-24433619 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:34174979-34174808 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 303-475 |
| Cow position: | chr12:37560649-37560479 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr12:42857898-42858070 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 303-480 |
| Cow position: | chr12:53720-53900 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 303-483 |
| Cow position: | chr12:3362570-3362392 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 168, 38 |
| Conread position: | 303-484 |
| Cow position: | chr12:42606615-42606794 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-487 |
| Cow position: | chr12:14660714-14660895 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-487 |
| Cow position: | chr12:23140538-23140721 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 303-487 |
| Cow position: | chr12:24994327-24994509 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr12:27854329-27854511 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 310-475 |
| Cow position: | chr12:43913467-43913304 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 310-487 |
| Cow position: | chr12:27931280-27931454 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 311-437 |
| Cow position: | chr12:33042988-33042863 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 312-475 |
| Cow position: | chr12:34174743-34174583 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.