Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8033B19.5 |
| Conread position: | 6-296 |
| Cow position: | chr14:12146687-12146402 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 192, 160 |
| Conread position: | 15-274 |
| Cow position: | chr14:20984140-20984394 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 27-300 |
| Cow position: | chr14:10937487-10937761 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 43-291 |
| Cow position: | chr14:26172566-26172321 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 155, 125 |
| Conread position: | 44-293 |
| Cow position: | chr14:11043662-11043417 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 128 |
| Conread position: | 46-297 |
| Cow position: | chr14:7198329-7198577 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 153, 96 |
| Conread position: | 46-306 |
| Cow position: | chr14:10609513-10609769 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 153, 46 |
| Conread position: | 49-288 |
| Cow position: | chr14:29964854-29965089 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 101, 117 |
| Conread position: | 51-301 |
| Cow position: | chr14:34775910-34775663 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 148, 82 |
| Conread position: | 55-283 |
| Cow position: | chr14:18301799-18302026 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 292-487 |
| Cow position: | chr14:10148177-10147984 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 300-437 |
| Cow position: | chr14:44380642-44380507 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 301-451 |
| Cow position: | chr14:25693241-25693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 301-474 |
| Cow position: | chr14:13862803-13862975 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-474 |
| Cow position: | chr14:43559533-43559358 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 301-474 |
| Cow position: | chr14:44553132-44552960 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 165, 95 |
| Conread position: | 301-474 |
| Cow position: | chr14:45188514-45188687 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 301-475 |
| Cow position: | chr14:12611705-12611533 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-475 |
| Cow position: | chr14:15274544-15274717 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-475 |
| Cow position: | chr14:17687790-17687618 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 301-475 |
| Cow position: | chr14:48601055-48601228 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 301-483 |
| Cow position: | chr14:33678357-33678178 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 301-483 |
| Cow position: | chr14:45207575-45207391 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 148, 95 |
| Conread position: | 301-487 |
| Cow position: | chr14:18417797-18417606 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 301-487 |
| Cow position: | chr14:40167382-40167574 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 302-472 |
| Cow position: | chr14:45027708-45027877 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 302-475 |
| Cow position: | chr14:17490046-17490217 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 302-476 |
| Cow position: | chr14:16342607-16342781 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 10, 93 |
| Conread position: | 302-486 |
| Cow position: | chr14:751859-751674 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 302-487 |
| Cow position: | chr14:9521426-9521614 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 303-451 |
| Cow position: | chr14:11654574-11654721 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 303-453 |
| Cow position: | chr14:7473643-7473494 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-453 |
| Cow position: | chr14:16999766-16999915 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-472 |
| Cow position: | chr14:27978647-27978480 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-473 |
| Cow position: | chr14:2295560-2295389 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 145, 41 |
| Conread position: | 303-474 |
| Cow position: | chr14:1659746-1659577 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-474 |
| Cow position: | chr14:5514219-5514052 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 303-474 |
| Cow position: | chr14:5530349-5530179 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-474 |
| Cow position: | chr14:33402971-33402804 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 303-474 |
| Cow position: | chr14:45086513-45086345 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:2287556-2287388 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:9046871-9046701 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:13780243-13780073 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:16808031-16808201 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:19326971-19327141 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:20783759-20783589 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:22030158-22030328 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:23256070-23256240 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:32448245-32448077 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr14:37225445-37225275 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-476 |
| Cow position: | chr14:33403128-33402960 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 161, 15 |
| Conread position: | 303-479 |
| Cow position: | chr14:23932880-23932708 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 91 |
| Conread position: | 303-481 |
| Cow position: | chr14:13304244-13304069 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-483 |
| Cow position: | chr14:11476001-11476180 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 303-485 |
| Cow position: | chr14:12123891-12124073 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 174, 90 |
| Conread position: | 303-485 |
| Cow position: | chr14:37454656-37454839 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 91 |
| Conread position: | 303-487 |
| Cow position: | chr14:191336-191154 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-487 |
| Cow position: | chr14:11152861-11153043 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-487 |
| Cow position: | chr14:35930878-35930694 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 151, 75 |
| Conread position: | 303-487 |
| Cow position: | chr14:44290355-44290173 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-487 |
| Cow position: | chr14:45670744-45670926 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 310-472 |
| Cow position: | chr14:16918431-16918591 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 310-486 |
| Cow position: | chr14:29046388-29046563 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 156, 80 |
| Conread position: | 312-474 |
| Cow position: | chr14:48826557-48826394 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 82 |
| Conread position: | 312-475 |
| Cow position: | chr14:12741754-12741915 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 316-486 |
| Cow position: | chr14:48253039-48253207 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 319-452 |
| Cow position: | chr14:44227652-44227520 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 342-474 |
| Cow position: | chr14:16272043-16272174 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.