Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8033B19.5 |
| Conread position: | 14-297 |
| Cow position: | chr16:591563-591847 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 20-297 |
| Cow position: | chr16:38663474-38663748 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 176, 20 |
| Conread position: | 22-286 |
| Cow position: | chr16:8738298-8738040 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 177, 32 |
| Conread position: | 45-284 |
| Cow position: | chr16:46433114-46433350 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 46-224 |
| Cow position: | chr16:10011639-10011816 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 152, 86 |
| Conread position: | 55-301 |
| Cow position: | chr16:38244418-38244666 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 87 |
| Conread position: | 292-474 |
| Cow position: | chr16:19149643-19149823 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 297-443 |
| Cow position: | chr16:27712232-27712374 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 297-481 |
| Cow position: | chr16:5871840-5871658 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 298-474 |
| Cow position: | chr16:18667338-18667159 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 300-474 |
| Cow position: | chr16:49255283-49255456 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 301-432 |
| Cow position: | chr16:42735630-42735760 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 301-437 |
| Cow position: | chr16:2237818-2237952 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 301-439 |
| Cow position: | chr16:338133-337998 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 301-452 |
| Cow position: | chr16:16898404-16898252 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 301-458 |
| Cow position: | chr16:25001343-25001497 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 301-464 |
| Cow position: | chr16:29034889-29034725 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-474 |
| Cow position: | chr16:12537001-12537171 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 301-475 |
| Cow position: | chr16:838268-838095 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 301-475 |
| Cow position: | chr16:1861186-1861012 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 301-475 |
| Cow position: | chr16:5890951-5890777 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-475 |
| Cow position: | chr16:16519820-16519992 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-475 |
| Cow position: | chr16:18497365-18497540 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 301-475 |
| Cow position: | chr16:25258753-25258580 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-475 |
| Cow position: | chr16:51085108-51084934 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 301-475 |
| Cow position: | chr16:54324384-54324558 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 301-483 |
| Cow position: | chr16:7675506-7675684 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 301-487 |
| Cow position: | chr16:5485674-5485487 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 301-487 |
| Cow position: | chr16:23809305-23809118 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 301-487 |
| Cow position: | chr16:28158518-28158330 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 302-422 |
| Cow position: | chr16:48333643-48333764 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 93 |
| Conread position: | 302-472 |
| Cow position: | chr16:16991798-16991628 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 302-475 |
| Cow position: | chr16:5527436-5527608 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 302-475 |
| Cow position: | chr16:28196291-28196464 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 302-487 |
| Cow position: | chr16:14664865-14665049 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 302-488 |
| Cow position: | chr16:27005980-27005791 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 303-427 |
| Cow position: | chr16:41685314-41685431 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 303-435 |
| Cow position: | chr16:26979059-26978928 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 111, 90 |
| Conread position: | 303-437 |
| Cow position: | chr16:49220970-49221100 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 303-453 |
| Cow position: | chr16:27732435-27732584 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 303-473 |
| Cow position: | chr16:29047969-29047800 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-474 |
| Cow position: | chr16:1433134-1432966 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-474 |
| Cow position: | chr16:15568204-15568033 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 91 |
| Conread position: | 303-475 |
| Cow position: | chr16:2482189-2482358 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:2726268-2726436 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:3088257-3088427 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:5662786-5662616 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:8815162-8815329 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:10439205-10439035 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:15186026-15185856 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:16270188-16270358 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:23984246-23984077 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:25342918-25342748 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:25442576-25442406 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:25456534-25456704 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:37479909-37480078 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:40556998-40557168 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr16:43896315-43896485 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-486 |
| Cow position: | chr16:23671649-23671461 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 303-487 |
| Cow position: | chr16:5119072-5119254 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr16:19778705-19778884 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr16:27594454-27594272 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-499 |
| Cow position: | chr16:28169375-28169571 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 165, 91 |
| Conread position: | 305-472 |
| Cow position: | chr16:10374653-10374816 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 310-465 |
| Cow position: | chr16:29984959-29984801 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 86 |
| Conread position: | 310-474 |
| Cow position: | chr16:25086552-25086389 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 310-475 |
| Cow position: | chr16:2409994-2410152 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 310-475 |
| Cow position: | chr16:40295225-40295384 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 310-480 |
| Cow position: | chr16:20202915-20202744 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 310-487 |
| Cow position: | chr16:23534961-23535140 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 333-475 |
| Cow position: | chr16:28470153-28470293 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.