Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8033B19.5 |
| Conread position: | 17-298 |
| Cow position: | chr18:9029814-9029539 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 181, 15 |
| Conread position: | 24-287 |
| Cow position: | chr18:52649135-52649407 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 29-293 |
| Cow position: | chr18:32600246-32599985 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 39-294 |
| Cow position: | chr18:50959671-50959420 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 159, 103 |
| Conread position: | 41-300 |
| Cow position: | chr18:1954403-1954662 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 46-300 |
| Cow position: | chr18:22789915-22790158 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 152, 76 |
| Conread position: | 47-216 |
| Cow position: | chr18:16227735-16227568 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 151, 97 |
| Conread position: | 51-296 |
| Cow position: | chr18:49038624-49038393 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 55-301 |
| Cow position: | chr18:33524417-33524163 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 208 |
| Conread position: | 67-288 |
| Cow position: | chr18:19628848-19629066 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 301-458 |
| Cow position: | chr18:29074664-29074508 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 301-475 |
| Cow position: | chr18:14417700-14417526 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 301-475 |
| Cow position: | chr18:29238620-29238450 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 301-475 |
| Cow position: | chr18:35054857-35054688 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 301-476 |
| Cow position: | chr18:33752428-33752256 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 302-464 |
| Cow position: | chr18:37490558-37490398 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 94 |
| Conread position: | 302-482 |
| Cow position: | chr18:51274348-51274526 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 303-422 |
| Cow position: | chr18:32166194-32166312 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-432 |
| Cow position: | chr18:40482726-40482598 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-472 |
| Cow position: | chr18:51461321-51461488 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-474 |
| Cow position: | chr18:14132119-14131950 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 303-474 |
| Cow position: | chr18:19485872-19485702 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:25352989-25352819 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:26244893-26245063 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:27538592-27538422 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:27988915-27988745 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:28972157-28972327 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:29864881-29865051 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:35373036-35373207 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 303-475 |
| Cow position: | chr18:36510346-36510176 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:37507692-37507522 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 92 |
| Conread position: | 303-475 |
| Cow position: | chr18:41839087-41839250 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:51343412-51343242 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-475 |
| Cow position: | chr18:51695431-51695261 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 303-482 |
| Cow position: | chr18:24617862-24617685 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 303-487 |
| Cow position: | chr18:5534738-5534557 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 303-487 |
| Cow position: | chr18:16174891-16175077 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 149, 91 |
| Conread position: | 303-487 |
| Cow position: | chr18:25922120-25921936 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 170, 91 |
| Conread position: | 303-488 |
| Cow position: | chr18:19354096-19353913 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 310-481 |
| Cow position: | chr18:16089842-16089674 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 312-444 |
| Cow position: | chr18:2645813-2645944 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 312-475 |
| Cow position: | chr18:32769445-32769285 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 322-480 |
| Cow position: | chr18:16392403-16392563 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 346-487 |
| Cow position: | chr18:47743193-47743054 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 349-487 |
| Cow position: | chr18:33270591-33270455 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.