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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8033K08.5
        

               
Conread position:
               
1-183
               

               
Cow position:
               
chr18:56494303-56494485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr18:54968329-54968554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr18:42744090-42743864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 10
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr18:42791591-42791817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr18:52447652-52447877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr18:54993867-54994094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr18:53509361-53509593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr18:56494135-56494367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr18:54993783-54994013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
91, 102
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr18:42744510-42744276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr18:54992775-54993009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr18:55075128-55075362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr18:52447904-52448138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr18:42792515-42792762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 92
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr18:53498350-53498595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
169, 102
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr18:53586624-53586377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
173, 186
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr18:54979767-54980013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr18:22634931-22635183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr18:41198202-41198455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
195, 182
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr18:42792011-42792264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
111, 96
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr18:44398064-44397811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr18:54967410-54967664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 103
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:55066903-55066649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
112, 106
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:56434504-56434757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 102
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:42791675-42791930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:42837729-42837474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
234, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:53498599-53498857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:53509529-53509784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
185, 196
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:53525983-53526238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:54967242-54967497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
236, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:54968161-54968416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:54980187-54980442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:54980355-54980609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
238, 215
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:54993111-54993366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:55008934-55009189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:55018087-55018342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:56493883-56494138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
89, 100
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr18:54967995-54968249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
238, 37
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr18:56434168-56434424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
102, 89
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr18:56433839-56434100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr18:50059248-50058986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 19
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:55009101-55009364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 228
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr18:55018507-55018773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:53586372-53586106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 105
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr18:54967827-54968127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 200
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:42675114-42674811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:42744174-42743871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:54966990-54967293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
195, 189
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:54979515-54979818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
195, 173
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:54980103-54980406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 175
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:54993363-54993666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:55008850-55009153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
195, 189
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:55018423-55018726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:22634679-22634983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 95
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:54967578-54967879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:54992942-54993247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:54993195-54993499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 190
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:54993447-54993751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:55008516-55008818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
195, 43
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:55017835-55018139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
195, 189
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr18:55018255-55018559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr18:54993531-54993836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr18:50271922-50272101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr18:54992860-54993112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
194, 178
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr18:55018172-55018474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
165, 188
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr18:54979852-54980155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 172
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr18:53509280-53509532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr18:53525734-53525986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr18:53526069-53526322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 103
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr18:53509616-53509917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
109, 102
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr18:50271841-50272090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
192, 9
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr18:49022687-49022941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr18:44398311-44398015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chr18:53586871-53586621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
190, 184
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chr18:55008771-55009021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr18:14453243-14453017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
190, 183
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr18:53586198-53585971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr18:51969303-51969551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr18:56494060-56494306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
178, 187
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr18:53525824-53526078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr18:53560396-53560640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
100, 94
               

               
Conread position:
               
12-254
               

               
Cow position:
               
chr18:55066724-55066479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
13-227
               

               
Cow position:
               
chr18:52447831-52448045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-235
               

               
Cow position:
               
chr18:42744414-42744192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
174, 184
               

               
Conread position:
               
13-235
               

               
Cow position:
               
chr18:53586276-53586054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
184, 177
               

               
Conread position:
               
13-241
               

               
Cow position:
               
chr18:51400835-51401064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
222, 0
               

               
Conread position:
               
13-251
               

               
Cow position:
               
chr18:53498020-53498261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 82
               

               
Conread position:
               
13-251
               

               
Cow position:
               
chr18:53559893-53560134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
13-253
               

               
Cow position:
               
chr18:53560229-53560472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 93
               

               
Conread position:
               
13-254
               

               
Cow position:
               
chr18:50848554-50848798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
184, 178
               

               
Conread position:
               
13-254
               

               
Cow position:
               
chr18:51400751-51400995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
13-254
               

               
Cow position:
               
chr18:52447999-52448243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
13-264
               

               
Cow position:
               
chr18:53560313-53560565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
182, 177
               

               
Conread position:
               
13-273
               

               
Cow position:
               
chr18:56434348-56434612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
100, 93
               

               
Conread position:
               
13-296
               

               
Cow position:
               
chr18:53526163-53526452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
13-297
               

               
Cow position:
               
chr18:54979947-54980239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr18:40075074-40075374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
212, 204
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr18:53509710-53509998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
15-235
               

               
Cow position:
               
chr18:53560483-53560703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
15-254
               

               
Cow position:
               
chr18:41198047-41198290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
15-271
               

               
Cow position:
               
chr18:50083923-50084183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
16-251
               

               
Cow position:
               
chr18:55523866-55524104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
16-253
               

               
Cow position:
               
chr18:54993630-54993870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
16-263
               

               
Cow position:
               
chr18:55523782-55524033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
17-233
               

               
Cow position:
               
chr18:52448087-52448304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 176
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr18:56434688-56434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
179, 63
               

               
Conread position:
               
18-246
               

               
Cow position:
               
chr18:40324158-40323927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
18-251
               

               
Cow position:
               
chr18:50058811-50058575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
18-252
               

               
Cow position:
               
chr18:50058727-50058492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 89
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr18:54980036-54980324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 0
               

               
Conread position:
               
18-298
               

               
Cow position:
               
chr18:54993044-54993332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
221, 0
               

               
Conread position:
               
19-241
               

               
Cow position:
               
chr18:40074996-40075219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-251
               

               
Cow position:
               
chr18:55524037-55524271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 87
               

               
Conread position:
               
19-252
               

               
Cow position:
               
chr18:55018357-55018593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:54968095-54968332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:54979617-54979854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:54980289-54980526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:55009036-55009273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
221, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:55018609-55018848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:55066633-55066396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:55067053-55066816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr18:56434270-56434507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-254
               

               
Cow position:
               
chr18:22634865-22635103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr18:54966924-54967209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
177, 159
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr18:54992709-54992994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr18:54993297-54993582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr18:49022787-49023079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 132
               

               
Conread position:
               
21-246
               

               
Cow position:
               
chr18:53498534-53498762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
21-253
               

               
Cow position:
               
chr18:41198140-41198373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
22-235
               

               
Cow position:
               
chr18:53559733-53559947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
22-246
               

               
Cow position:
               
chr18:40075418-40075645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 77
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:44398212-44397977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 85
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:53525919-53526154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 171
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:53586520-53586285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
5, 169
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:55523535-55523770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 97
               

               
Conread position:
               
22-296
               

               
Cow position:
               
chr18:53559817-53560100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 169
               

               
Conread position:
               
22-297
               

               
Cow position:
               
chr18:22634784-22635067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
217, 0
               

               
Conread position:
               
23-296
               

               
Cow position:
               
chr18:54993721-54993999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
166, 153
               

               
Conread position:
               
24-251
               

               
Cow position:
               
chr18:43093441-43093209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr18:56434107-56434338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
26-210
               

               
Cow position:
               
chr18:22635040-22635224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-171
               

               
Cow position:
               
chr18:51765933-51765789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
27-235
               

               
Cow position:
               
chr18:44398374-44398166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
157, 166
               

               
Conread position:
               
27-241
               

               
Cow position:
               
chr18:51812735-51812520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
27-252
               

               
Cow position:
               
chr18:51969815-51970042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
27-253
               

               
Cow position:
               
chr18:51789576-51789347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
27-253
               

               
Cow position:
               
chr18:51969406-51969633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
27-261
               

               
Cow position:
               
chr18:53587018-53586781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
212, 0
               

               
Conread position:
               
27-296
               

               
Cow position:
               
chr18:40074920-40075197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
27-296
               

               
Cow position:
               
chr18:55017777-55018054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
169, 163
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr18:14453138-14452945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr18:41197557-41197756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr18:42791198-42791397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 70
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr18:42791870-42792069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr18:41949282-41949077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
169, 148
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr18:42744231-42744026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr18:42959738-42959533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr18:43175122-43174917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
156, 169
               

               
Conread position:
               
28-233
               

               
Cow position:
               
chr18:44397785-44397580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
28-234
               

               
Cow position:
               
chr18:55066540-55066334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
167, 162
               

               
Conread position:
               
28-241
               

               
Cow position:
               
chr18:51789491-51789277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
160, 167
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:33092872-33092652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
85, 69
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:40306403-40306623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:40306739-40306959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:42674751-42674531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:50295422-50295642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr18:55523374-55523595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
28-250
               

               
Cow position:
               
chr18:55066960-55066734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
28-250
               

               
Cow position:
               
chr18:55523626-55523851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
28-251
               

               
Cow position:
               
chr18:1418236-1418462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 70
               

               
Conread position:
               
28-251
               

               
Cow position:
               
chr18:42674919-42674693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
28-251
               

               
Cow position:
               
chr18:42791114-42791340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 83
               

               
Conread position:
               
28-252
               

               
Cow position:
               
chr18:53586765-53586538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 76
               

               
Conread position:
               
28-252
               

               
Cow position:
               
chr18:54992634-54992861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:42675003-42674775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
85, 72
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:42837786-42837558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:43093100-43092872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 169
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:44397869-44397641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:53559992-53560220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
84, 78
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:53560076-53560304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr18:55066792-55066564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 162
               

               
Conread position:
               
28-254
               

               
Cow position:
               
chr18:40324734-40324505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
130, 125
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr18:55523710-55523940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
28-259
               

               
Cow position:
               
chr18:44184484-44184250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr18:55008709-55008944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr18:50848905-50849143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr18:53498203-53498447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr18:53560160-53560398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
167, 162
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr18:42792206-42792445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr18:42984822-42984581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 65
               

               
Conread position:
               
28-267
               

               
Cow position:
               
chr18:53586933-53586693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
158, 169
               

               
Conread position:
               
28-294
               

               
Cow position:
               
chr18:42792122-42792396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chr18:54967185-54967463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chr18:54979710-54979988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chr18:55018030-55018308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 0
               

               
Conread position:
               
28-302
               

               
Cow position:
               
chr18:44397953-44397670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 69
               

               
Conread position:
               
29-235
               

               
Cow position:
               
chr18:22634623-22634829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-263
               

               
Cow position:
               
chr18:53571962-53572188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
31-253
               

               
Cow position:
               
chr18:54967773-54967998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
33-261
               

               
Cow position:
               
chr18:53586676-53586445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
39-251
               

               
Cow position:
               
chr18:56494005-56494220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
156, 146
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr18:53525685-53525902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr18:56494257-56494474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
156, 146
               

               
Conread position:
               
39-264
               

               
Cow position:
               
chr18:56434047-56434266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
198, 53
               

               
Conread position:
               
39-276
               

               
Cow position:
               
chr18:53509231-53509469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 53
               

               
Conread position:
               
40-246
               

               
Cow position:
               
chr18:53586417-53586209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
40-253
               

               
Cow position:
               
chr18:55067116-55066900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
148, 157
               

               
Conread position:
               
40-254
               

               
Cow position:
               
chr18:55008637-55008854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
40-261
               

               
Cow position:
               
chr18:53498131-53498361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
40-272
               

               
Cow position:
               
chr18:40306667-40306902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
40-296
               

               
Cow position:
               
chr18:55017958-55018222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 63
               

               
Conread position:
               
40-297
               

               
Cow position:
               
chr18:54967113-54967378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
41-172
               

               
Cow position:
               
chr18:56493839-56493970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-297
               

               
Cow position:
               
chr18:54967703-54967963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
70-253
               

               
Cow position:
               
chr18:55075112-55075299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 120
               
Show alignments to all cow chromosomes.